AT4G10840.1 :

DomainDescriptionEvalueBitsGAStartEnd
TPR_16Tetratricopeptide repeat0.39332.7089116
RPN726S proteasome subunit RPN70.36225.30138167
TPR_10Tetratricopeptide repeat2.9E-092827.50139169
TPR_12Tetratricopeptide repeat2.5E-103230.10139213
TPR_17Tetratricopeptide repeat0.015724.40140159
DUF3856Domain of Unknown Function (DUF3856)0.12327.00140168
TPR_4Tetratricopeptide repeat0.15422.00141160
ANAPC3Anaphase-promoting complex, cyclosome, subunit 30.13427.20142166
TPR_2Tetratricopeptide repeat0.0026922.40142168
TPR_7Tetratricopeptide repeat4.4E-051527.90142166
TPR_1Tetratricopeptide repeat4.8E-051420.40143168
TPR_8Tetratricopeptide repeat0.024625.70143168
TPR_14Tetratricopeptide repeat0.00141123.50145181
TPR_MalTMalT-like TPR region5.7E-134027.00145292
TPR_19Tetratricopeptide repeat0.094425.00146160
TPR_9Tetratricopeptide repeat0.12435.00147169
PPRPPR repeat0.086425.00147160
TPR_16Tetratricopeptide repeat0.21332.70149204
TPR_11TPR repeat0.0065726.80149168
TPR_5Tetratrico peptide repeat0.33221.40151208
TPR_19Tetratricopeptide repeat0.23325.00154208
TPR_2Tetratricopeptide repeat7.7E-051422.40185212
TPR_1Tetratricopeptide repeat5.3E-051420.40186212
TPR_14Tetratricopeptide repeat0.00261023.50186232
TPR_8Tetratricopeptide repeat0.000181325.70186212
TPR_12Tetratricopeptide repeat1.2E-092930.10188256
TPR_7Tetratricopeptide repeat0.03627.90188210
TPR_10Tetratricopeptide repeat0.000371127.50189222
TPR_11TPR repeat0.0082726.80193212
TPR_19Tetratricopeptide repeat2.3E-051625.00219263
Foie-gras_1Foie gras liver health family 10.85023.10224249
14-3-314-3-3 protein0.7020.70225250
DUF2225Uncharacterized protein conserved in bacteria (DUF2225)0.31220.60226281
RPN726S proteasome subunit RPN70.39125.30226253
TPR_2Tetratricopeptide repeat0.0088722.40226255
TPR_7Tetratricopeptide repeat0.0018927.90227257
SPO22Meiosis protein SPO22/ZIP4 like0.3125.40227261
HEPNHEPN domain0.89121.00228259
TPR_10Tetratricopeptide repeat3.4E-051527.50228260
TPR_1Tetratricopeptide repeat0.000131320.40229255
TPR_14Tetratricopeptide repeat0.26423.50230255
Fis1_TPR_CFis1 C-terminal tetratricopeptide repeat0.000281225.30230270
ANAPC3Anaphase-promoting complex, cyclosome, subunit 30.0042827.20230290
TPR_21Tetratricopeptide repeat-like domain2.1E-061925.50231341
PPRPPR repeat0.19325.00231250
TPR_12Tetratricopeptide repeat1.7E-082630.10231290
SNAPSoluble NSF attachment protein, SNAP3.3E-092825.00232368
DUF3856Domain of Unknown Function (DUF3856)0.067427.00232277
TPR_14Tetratricopeptide repeat0.24423.50270290
TPR_19Tetratricopeptide repeat0.42225.00271290
TPR_5Tetratrico peptide repeat0.054521.40271334
TPR_1Tetratricopeptide repeat0.0058820.40273290
TPR_7Tetratricopeptide repeat0.0056827.90273290
TPR_2Tetratricopeptide repeat0.01722.40273290
TPR_8Tetratricopeptide repeat0.11425.70274290
TPR_MalTMalT-like TPR region1.7E-103227.00276425
TPR_11TPR repeat0.14326.80279290
TPR_19Tetratricopeptide repeat0.09425.00280330
RPN726S proteasome subunit RPN70.093325.30301335
HEPNHEPN domain0.011721.00305381
TPR_12Tetratricopeptide repeat1E-134230.10306381
TPR_7Tetratricopeptide repeat0.000961027.90312335
TPR_2Tetratricopeptide repeat6.2E-061722.40313335
TPR_1Tetratricopeptide repeat1.7E-072220.40313336
TPR_10Tetratricopeptide repeat0.01727.50313346
TPR_8Tetratricopeptide repeat7.3E-051425.70313335
DUF3856Domain of Unknown Function (DUF3856)0.000311227.00313427
TPR_14Tetratricopeptide repeat0.37323.50314338
TPR_11TPR repeat0.000981026.80314334
DUF2225Uncharacterized protein conserved in bacteria (DUF2225)2.9E-061820.60317382
14-3-314-3-3 protein0.35120.70325352
TPR_19Tetratricopeptide repeat0.013725.00330372
TPR_17Tetratricopeptide repeat0.041624.40343367
RPN726S proteasome subunit RPN70.00111025.30349463
TPR_8Tetratricopeptide repeat1.1E-051725.70350380
TPR_10Tetratricopeptide repeat0.000461127.50350380
TPR_1Tetratricopeptide repeat0.000331220.40350379
TPR_2Tetratricopeptide repeat0.00011422.40351380
TPR_6Tetratricopeptide repeat0.18426.30352379
TPR_7Tetratricopeptide repeat0.00131027.90353378
TPR_14Tetratricopeptide repeat0.044623.50353380
TPR_4Tetratricopeptide repeat0.65222.00354367
SPO22Meiosis protein SPO22/ZIP4 like0.0012925.40367461
SNAPSoluble NSF attachment protein, SNAP0.000241225.00393498
TPR_10Tetratricopeptide repeat0.021627.50395421
TPR_2Tetratricopeptide repeat0.0083822.40396422
TPR_12Tetratricopeptide repeat1.6E-082630.10396460
TPR_8Tetratricopeptide repeat0.48225.70397421
TPR_14Tetratricopeptide repeat0.42323.50400418
TPR_7Tetratricopeptide repeat0.014727.90400425
DUF4810Domain of unknown function (DUF4810)5.9E-051534.70400458
DUF3856Domain of Unknown Function (DUF3856)0.36227.00401460
TPR_1Tetratricopeptide repeat0.054520.40401421
Foie-gras_1Foie gras liver health family 10.002923.10402465
TPR_5Tetratrico peptide repeat0.73121.40404437
RPN726S proteasome subunit RPN70.0095725.30406469
TPR_19Tetratricopeptide repeat0.000361225.00408458
DUF2225Uncharacterized protein conserved in bacteria (DUF2225)0.58120.60409470
TPR_21Tetratricopeptide repeat-like domain0.0028825.50416467
TPR_14Tetratricopeptide repeat0.052623.50437461
TPR_8Tetratricopeptide repeat0.025625.70438460
TPR_1Tetratricopeptide repeat0.000211220.40438460
TPR_7Tetratricopeptide repeat0.035527.90438461
TPR_2Tetratricopeptide repeat0.000141322.40438460
TPR_6Tetratricopeptide repeat0.033626.30438461
TPR_9Tetratricopeptide repeat0.027635.00439462
TPR_10Tetratricopeptide repeat6.4E-051427.50439465
ANAPC3Anaphase-promoting complex, cyclosome, subunit 30.29327.20440458
TPR_4Tetratricopeptide repeat0.55222.00440457
TPR_MalTMalT-like TPR region3.8E-072127.00441570
TPR_11TPR repeat0.051426.80442460
TPR_16Tetratricopeptide repeat0.006832.70443460
TPR_3Tetratricopeptide repeat0.072420.70443457
ANAPC3Anaphase-promoting complex, cyclosome, subunit 30.59227.20455499
TPR_12Tetratricopeptide repeat4.2E-144430.10476548
TPR_1Tetratricopeptide repeat0.01720.40476500
TPR_2Tetratricopeptide repeat0.0051822.40476500
TPR_7Tetratricopeptide repeat0.028627.90477499
TPR_10Tetratricopeptide repeat0.0076727.50477506
TPR_8Tetratricopeptide repeat0.039625.70477500
PPRPPR repeat0.13425.00480499
SNAPSoluble NSF attachment protein, SNAP0.023525.00489544
DUF3856Domain of Unknown Function (DUF3856)0.043527.00491552
14-3-314-3-3 protein0.0019920.70491570
TPR_19Tetratricopeptide repeat5E-051525.00491544
TPR_10Tetratricopeptide repeat5.2E-123627.50515556
ANAPC3Anaphase-promoting complex, cyclosome, subunit 30.88127.20517541
TPR_4Tetratricopeptide repeat0.006922.00518541
TPR_17Tetratricopeptide repeat0.045524.40518537
TPR_1Tetratricopeptide repeat3.9E-072120.40518547
TPR_2Tetratricopeptide repeat1.4E-051622.40518547
TPR_8Tetratricopeptide repeat7E-072025.70518548
TPR_7Tetratricopeptide repeat2.3E-072227.90519549
TPR_14Tetratricopeptide repeat0.0031023.50521546
TPR_6Tetratricopeptide repeat0.00191026.30521544
TPR_5Tetratrico peptide repeat0.12421.40521554
TPR_3Tetratricopeptide repeat0.13320.70522542
ANAPC3Anaphase-promoting complex, cyclosome, subunit 30.37227.20522550
TPR_16Tetratricopeptide repeat0.04632.70522546
TPR_19Tetratricopeptide repeat5.6E-051525.00528573
TPR_11TPR repeat0.02626.80528547
PPRPPR repeat0.73225.00529543

 609

TPR_16
RPN7
TPR_10
TPR_12
TPR_17
DUF3856
TPR_4
ANAPC3
TPR_2
TPR_7
TPR_1
TPR_8
TPR_14
TPR_MalT
TPR_19
TPR_9
PPR
TPR_16
TPR_11
TPR_5
TPR_19
TPR_2
TPR_1
TPR_14
TPR_8
TPR_12
TPR_7
TPR_10
TPR_11
TPR_19
Foie-gras_1
14-3-3
DUF2225
RPN7
TPR_2
TPR_7
SPO22
HEPN
TPR_10
TPR_1
TPR_14
Fis1_TPR_C
ANAPC3
TPR_21
PPR
TPR_12
SNAP
DUF3856
TPR_14
TPR_19
TPR_5
TPR_1
TPR_7
TPR_2
TPR_8
TPR_MalT
TPR_11
TPR_19
RPN7
HEPN
TPR_12
TPR_7
TPR_2
TPR_1
TPR_10
TPR_8
DUF3856
TPR_14
TPR_11
DUF2225
14-3-3
TPR_19
TPR_17
RPN7
TPR_8
TPR_10
TPR_1
TPR_2
TPR_6
TPR_7
TPR_14
TPR_4
SPO22
SNAP
TPR_10
TPR_2
TPR_12
TPR_8
TPR_14
TPR_7
DUF4810
DUF3856
TPR_1
Foie-gras_1
TPR_5
RPN7
TPR_19
DUF2225
TPR_21
TPR_14
TPR_8
TPR_1
TPR_7
TPR_2
TPR_6
TPR_9
TPR_10
ANAPC3
TPR_4
TPR_MalT
TPR_11
TPR_16
TPR_3
ANAPC3
TPR_12
TPR_1
TPR_2
TPR_7
TPR_10
TPR_8
PPR
SNAP
DUF3856
14-3-3
TPR_19
TPR_10
ANAPC3
TPR_4
TPR_17
TPR_1
TPR_2
TPR_8
TPR_7
TPR_14
TPR_6
TPR_5
TPR_3
ANAPC3
TPR_16
TPR_19
TPR_11
PPR


References:

TPR_5

TPR_21

TPR_19

TPR_17

ANAPC3

TPR_14

DUF3856

TPR_11

TPR_10

TPR_3
12799000 Tetratricopeptide-like repeats in type-III-secretion chaperones and regulators. FEMS Microbiol Lett 2003;223:53-60.

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

SNAP

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

Foie-gras_1
16000385 A genetic screen in zebrafish identifies the mutants vps18, nf2 and foie gras as models of liver disease. Development. 2005;132:3561-3572.

HEPN
12765831 HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci 2003;28:224-226.

TPR_12

Fis1_TPR_C

14-3-3
7603573 Structure of a 14-3-3 protein and implications for coordination of multiple signalling pathways. Nature 1995;376:188-191.
7603574 Crystal structure of the zeta isoform of the 14-3-3 protein. Nature 1995;376:191-194.
8601312 Interaction of 14-3-3 with signaling proteins is mediated by the recognition of phosphoserine. Cell 1996;84:889-897.
9280296 The 14-3-3 protein binds its target proteins with a common site located towards the C-terminus. FEBS Lett 1997;413:273-276.
8798343 Molecular evolution of the 14-3-3 protein family. J Mol Evol 1996;43:384-398.
8684458 Function of 14-3-3 proteins. Nature 1996;382:308-308.
12184815 The 14-3-3s. Genome Biol 2002;3:REVIEWS3010.

DUF4810

TPR_4

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

SPO22
16314568 Bioinformatic analyses implicate the collaborating meiotic crossover/chiasma proteins Zip2, Zip3, and Spo22/Zip4 in ubiquitin labeling. Proc Natl Acad Sci U S A. 2005;102:17594-17599.
18369460 ZIP4H (TEX11) Deficiency in the Mouse Impairs Meiotic Double Strand Break Repair and the Regulation of Crossing Over. PLoS Genet. 2008;4:e1000042.
16740482 The meiosis-specific zip4 protein regulates crossover distribution by promoting synaptonemal complex formation together with zip2. Dev Cell. 2006;10:809-819.

DUF2225

TPR_16

TPR_MalT

TPR_9

TPR_8

TPR_7

TPR_6