c2pfam

AT4G11170.1 :

Domain Description Evalue Bits GA Start End
TIR TIR domain 0 174 21.20 11 186
TIR_2 TIR domain 3.7E-14 44 28.00 13 108
DUF815 Protein of unknown function (DUF815) 0.00015 11 20.10 159 232
AAA_16 AAA ATPase domain 1.3E-08 26 32.60 184 301
NB-ARC NB-ARC domain 1.1E-25 81 23.50 190 423
ATPase_2 ATPase domain predominantly from Archaea 1.6E-07 22 33.20 199 305
Rad17 Rad17 cell cycle checkpoint protein 1.7E-05 15 19.70 199 300
ResIII Type III restriction enzyme, res subunit 0.00033 11 20.90 203 236
AAA_30 AAA domain 0.00021 11 27.00 203 239
PhoH PhoH-like protein 0.0029 7 20.10 205 225
ABC_tran ABC transporter 1.6E-05 16 23.10 206 231
AAA_14 AAA domain 1.1E-07 22 27.00 206 332
AAA_22 AAA domain 4.4E-09 27 27.00 207 307
NACHT NACHT domain 3.9E-06 17 20.40 207 307
AAA_18 AAA domain 1.9E-07 22 29.40 208 330
AAA ATPase family associated with various cellular activities (AAA) 1.9E-08 25 20.80 210 316
PhoH PhoH-like protein 0.013 5 20.10 260 329
Phage_rep_org_N N-terminal phage replisome organiser (Phage_rep_org_N) 0.0013 9 22.00 455 500
LRR_8 Leucine rich repeat 0.003 8 27.00 609 640
LRR_3 Leucine Rich Repeat 1.2E-10 31 20.20 609 628
LRR_8 Leucine rich repeat 0.12 3 27.00 670 707
Phage_rep_org_N N-terminal phage replisome organiser (Phage_rep_org_N) 0.0023 8 22.00 763 808
LRR_8 Leucine rich repeat 0.0012 9 27.00 767 799

1095

TIR
TIR_2
DUF815
AAA_16
NB-ARC
ATPase_2
Rad17
ResIII
AAA_30
PhoH
ABC_tran
AAA_14
AAA_22
NACHT
AAA_18
AAA
PhoH
Phage_rep_org_N
LRR_8
LRR_3
LRR_8
Phage_rep_org_N
LRR_8

References:

DUF815

AAA_16

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

PhoH
8444794 Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993;175:1316-1324.

Phage_rep_org_N

LRR_3
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

LRR_8

ATPase_2

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_30

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

TIR_2

AAA_18

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

TIR
9013863 The cloning and characterization of human MyD88: a member of an IL-1 receptor related family. FEBS Lett 1997;402:81-84.
9237759 A human homologue of the Drosophila Toll protein signals activation of adaptive immunity [see comments] Nature 1997;388:394-397.
12186654 Toll-like receptors: a family of pattern-recognition receptors in mammals. Genome Biol 2002;3:REVIEWS3011.

AAA_22

ResIII

Domain	Description	Evalue	Bits	GA	Start	End
TIR	TIR domain	0	174	21.20	11	186
TIR_2	TIR domain	3.7E-14	44	28.00	13	108
DUF815	Protein of unknown function (DUF815)	0.00015	11	20.10	159	232
AAA_16	AAA ATPase domain	1.3E-08	26	32.60	184	301
NB-ARC	NB-ARC domain	1.1E-25	81	23.50	190	423
ATPase_2	ATPase domain predominantly from Archaea	1.6E-07	22	33.20	199	305
Rad17	Rad17 cell cycle checkpoint protein	1.7E-05	15	19.70	199	300
ResIII	Type III restriction enzyme, res subunit	0.00033	11	20.90	203	236
AAA_30	AAA domain	0.00021	11	27.00	203	239
PhoH	PhoH-like protein	0.0029	7	20.10	205	225
ABC_tran	ABC transporter	1.6E-05	16	23.10	206	231
AAA_14	AAA domain	1.1E-07	22	27.00	206	332
AAA_22	AAA domain	4.4E-09	27	27.00	207	307
NACHT	NACHT domain	3.9E-06	17	20.40	207	307
AAA_18	AAA domain	1.9E-07	22	29.40	208	330
AAA	ATPase family associated with various cellular activities (AAA)	1.9E-08	25	20.80	210	316
PhoH	PhoH-like protein	0.013	5	20.10	260	329
Phage_rep_org_N	N-terminal phage replisome organiser (Phage_rep_org_N)	0.0013	9	22.00	455	500
LRR_8	Leucine rich repeat	0.003	8	27.00	609	640
LRR_3	Leucine Rich Repeat	1.2E-10	31	20.20	609	628
LRR_8	Leucine rich repeat	0.12	3	27.00	670	707
Phage_rep_org_N	N-terminal phage replisome organiser (Phage_rep_org_N)	0.0023	8	22.00	763	808
LRR_8	Leucine rich repeat	0.0012	9	27.00	767	799