c2pfam

AT4G11370.1 :

Domain Description Evalue Bits GA Start End
Vps39_2 Vacuolar sorting protein 39 domain 2 0.0032 9 21.20 81 115
Zf_RING KIAA1045 RING finger 0.00078 10 30.80 82 116
zf-TFIIIC Putative zinc-finger of transcription factor IIIC complex 0.00014 13 23.00 83 143
Rad50_zn_hook Rad50 zinc hook motif 0.017 6 21.60 83 99
zf-rbx1 RING-H2 zinc finger domain 3.4E-10 31 31.00 83 130
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 4E-07 21 27.00 83 131
Prok-RING_1 Prokaryotic RING finger family 1 4.9E-05 14 29.10 84 115
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 3.7E-08 24 21.40 84 134
zf-RING_2 Ring finger domain 4.8E-15 47 27.30 85 130
FANCL_C FANCL C-terminal domain 3.8E-05 15 20.70 85 125
Rtf2 Replication termination factor 2 8.9E-06 16 27.40 85 135
zf-Nse Zinc-finger of the MIZ type in Nse subunit 7.7E-05 13 20.70 85 129
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 2.8E-08 24 27.00 86 129
PHD PHD-finger 0.0029 8 27.90 86 131
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 2.2E-05 15 27.30 86 128
RINGv RING-variant domain 2.6E-06 18 21.60 86 129
zf-RING_4 RING/Ubox like zinc-binding domain 6E-06 17 27.00 86 133
zf-RING_11 RING-like zinc finger 3.6E-11 34 27.00 86 114
Prok-RING_4 Prokaryotic RING finger family 4 7.3E-08 23 27.00 86 137
zf-RING_5 zinc-RING finger domain 2.5E-07 21 27.90 86 131
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 5.1E-10 30 21.00 86 129
zf-RING_UBOX RING-type zinc-finger 2E-09 28 25.20 86 127
zinc_ribbon_4 zinc-ribbon domain 0.07 4 30.30 103 109
zf-C3HC4_4 zinc finger of C3HC4-type, RING 0.0014 10 30.00 104 129
zf-RING-like RING-like domain 4.6E-05 15 21.60 104 129
Prok-RING_1 Prokaryotic RING finger family 1 0.0014 9 29.10 120 135
zf-RING_11 RING-like zinc finger 0.15 3 27.00 122 133
FANCL_C FANCL C-terminal domain 0.32 2 20.70 123 138
Rad50_zn_hook Rad50 zinc hook motif 0.0053 7 21.60 123 133
zinc_ribbon_4 zinc-ribbon domain 0.0014 9 30.30 123 133
Vps39_2 Vacuolar sorting protein 39 domain 2 0.27 3 21.20 123 133
zf-RING_UBOX RING-type zinc-finger 0.2 3 25.20 126 133

159

Vps39_2
Zf_RING
zf-TFIIIC
Rad50_zn_hook
zf-rbx1
zf-C3HC4_3
Prok-RING_1
zf-ANAPC11
zf-RING_2
FANCL_C
Rtf2
zf-Nse
zf-C3HC4_2
PHD
Zn_ribbon_17
RINGv
zf-RING_4
zf-RING_11
Prok-RING_4
zf-RING_5
zf-C3HC4
zf-RING_UBOX
zinc_ribbon_4
zf-C3HC4_4
zf-RING-like
Prok-RING_1
zf-RING_11
FANCL_C
Rad50_zn_hook
zinc_ribbon_4
Vps39_2
zf-RING_UBOX

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

Rtf2
19416828 Schizosaccharomyces pombe Rtf2 mediates site-specific replication termination by inhibiting replication restart. Proc Natl Acad Sci U S A. 2009;106:7927-7932.

Vps39_2
11062257 New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. J Cell Biol. 2000;151:551-562.
9111041 Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae. J Biol Chem. 1997;272:11344-11349.
1493335 Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell. 1992;3:1389-1402.

zf-C3HC4_2

Prok-RING_4

zf-RING_11

zf-TFIIIC

RINGv

zf-ANAPC11

zf-C3HC4_3

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

Rad50_zn_hook
12152085 The Rad50 zinc-hook is a structure joining Mre11 complexes in DNA recombination and repair. Nature 2002;418:562-566.
12151226 Tethering on the brink: the evolutionarily conserved Mre11-Rad50 complex. Trends Biochem Sci 2002;27:410-418.

zinc_ribbon_4

zf-RING_5

zf-RING_4

zf-RING_2

zf-RING-like

Zn_ribbon_17

Zf_RING

Prok-RING_1

zf-rbx1

zf-RING_UBOX

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

zf-C3HC4_4

Domain	Description	Evalue	Bits	GA	Start	End
Vps39_2	Vacuolar sorting protein 39 domain 2	0.0032	9	21.20	81	115
Zf_RING	KIAA1045 RING finger	0.00078	10	30.80	82	116
zf-TFIIIC	Putative zinc-finger of transcription factor IIIC complex	0.00014	13	23.00	83	143
Rad50_zn_hook	Rad50 zinc hook motif	0.017	6	21.60	83	99
zf-rbx1	RING-H2 zinc finger domain	3.4E-10	31	31.00	83	130
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	4E-07	21	27.00	83	131
Prok-RING_1	Prokaryotic RING finger family 1	4.9E-05	14	29.10	84	115
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	3.7E-08	24	21.40	84	134
zf-RING_2	Ring finger domain	4.8E-15	47	27.30	85	130
FANCL_C	FANCL C-terminal domain	3.8E-05	15	20.70	85	125
Rtf2	Replication termination factor 2	8.9E-06	16	27.40	85	135
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	7.7E-05	13	20.70	85	129
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	2.8E-08	24	27.00	86	129
PHD	PHD-finger	0.0029	8	27.90	86	131
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	2.2E-05	15	27.30	86	128
RINGv	RING-variant domain	2.6E-06	18	21.60	86	129
zf-RING_4	RING/Ubox like zinc-binding domain	6E-06	17	27.00	86	133
zf-RING_11	RING-like zinc finger	3.6E-11	34	27.00	86	114
Prok-RING_4	Prokaryotic RING finger family 4	7.3E-08	23	27.00	86	137
zf-RING_5	zinc-RING finger domain	2.5E-07	21	27.90	86	131
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	5.1E-10	30	21.00	86	129
zf-RING_UBOX	RING-type zinc-finger	2E-09	28	25.20	86	127
zinc_ribbon_4	zinc-ribbon domain	0.07	4	30.30	103	109
zf-C3HC4_4	zinc finger of C3HC4-type, RING	0.0014	10	30.00	104	129
zf-RING-like	RING-like domain	4.6E-05	15	21.60	104	129
Prok-RING_1	Prokaryotic RING finger family 1	0.0014	9	29.10	120	135
zf-RING_11	RING-like zinc finger	0.15	3	27.00	122	133
FANCL_C	FANCL C-terminal domain	0.32	2	20.70	123	138
Rad50_zn_hook	Rad50 zinc hook motif	0.0053	7	21.60	123	133
zinc_ribbon_4	zinc-ribbon domain	0.0014	9	30.30	123	133
Vps39_2	Vacuolar sorting protein 39 domain 2	0.27	3	21.20	123	133
zf-RING_UBOX	RING-type zinc-finger	0.2	3	25.20	126	133