c2pfam

AT4G11880.1 :

Domain Description Evalue Bits GA Start End
SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) 2.4E-30 92 20.40 10 57
CENP-K Centromere-associated protein K 7E-06 14 21.10 63 166
K-box K-box region 2.2E-27 84 20.60 84 172
RNA_pol_A_CTD Bacterial RNA polymerase, alpha chain C terminal domain 7.6E-06 14 21.40 89 140
FerA FerA (NUC095) domain 3.6E-05 12 20.00 125 154

221

SRF-TF
CENP-K
K-box
RNA_pol_A_CTD
FerA

References:

K-box
7958839 Function and regulation of the Arabidopsis floral homeotic gene PISTILLATA. Genes Dev 1994;8:1548-1560.
2031185 Predicting coiled coils from protein sequences. Science 1991;252:1162-1164.

CENP-K
16622419 The human CENP-A centromeric nucleosome-associated complex. Nat Cell Biol. 2006;8:458-469.

SRF-TF

RNA_pol_A_CTD
7491496 Solution structure of the activator contact domain of the RNA polymerase alpha subunit. Science 1995;270:1495-1497.
7613089 The Escherichia coli RNA polymerase alpha subunit: structure and function. Curr Opin Genet Dev 1995;5:197-203.
9050843 The two alpha subunits of Escherichia coli RNA polymerase are asymmetrically arranged and contact different halves of the DNA upstream element. Proc Natl Acad Sci USA 1997;94:1709-1714.

FerA
15112237 Insights into the evolution of the nucleolus by an analysis of its protein domain repertoire. Bioessays 2004;26:567-581.

Domain	Description	Evalue	Bits	GA	Start	End
SRF-TF	SRF-type transcription factor (DNA-binding and dimerisation domain)	2.4E-30	92	20.40	10	57
CENP-K	Centromere-associated protein K	7E-06	14	21.10	63	166
K-box	K-box region	2.2E-27	84	20.60	84	172
RNA_pol_A_CTD	Bacterial RNA polymerase, alpha chain C terminal domain	7.6E-06	14	21.40	89	140
FerA	FerA (NUC095) domain	3.6E-05	12	20.00	125	154