c2pfam

AT4G12020.1 :

Domain Description Evalue Bits GA Start End
Peptidase_C6 Helper component proteinase 0.00031 10 25.00 249 300
PAH Paired amphipathic helix repeat 8.4E-15 45 21.30 324 368
WRKY WRKY DNA -binding domain 5.7E-24 75 21.00 468 524
ABC_tran ABC transporter 0.16 3 23.10 538 612
Atg31 Autophagy-related protein 31 0.00098 9 25.00 550 601
WRKY WRKY DNA -binding domain 2.6E-09 28 21.00 641 661
AAA_16 AAA ATPase domain 2.2E-06 18 32.60 820 933
NB-ARC NB-ARC domain 7.2E-21 65 23.50 822 1031
AFG1_ATPase AFG1-like ATPase 0.00011 11 20.20 834 880
TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain 5.6E-05 12 19.90 835 871
ABC_tran ABC transporter 0.013 6 23.10 840 871
AAA_14 AAA domain 7.1E-05 13 27.00 840 954
AAA ATPase family associated with various cellular activities (AAA) 6.1E-05 14 20.80 842 914
Pkinase Protein kinase domain 0.59 0 20.40 857 910
LRR_8 Leucine rich repeat 0.75 0 27.00 1168 1187
LRR_3 Leucine Rich Repeat 2.2E-08 24 20.20 1228 1247
LRR_8 Leucine rich repeat 0.0038 7 27.00 1255 1292
LRR_4 Leucine Rich repeats (2 copies) 0.0003 12 27.00 1259 1297
LRR_8 Leucine rich repeat 4.7E-05 14 27.00 1282 1338
LRR_1 Leucine Rich Repeat 0.025 6 20.60 1282 1302
LRR_4 Leucine Rich repeats (2 copies) 8.2E-06 17 27.00 1305 1348
LRR_3 Leucine Rich Repeat 0.62 1 20.20 1306 1320
LRR_1 Leucine Rich Repeat 0.0072 8 20.60 1329 1371
LRR_8 Leucine rich repeat 0.0013 9 27.00 1349 1381
LRR_4 Leucine Rich repeats (2 copies) 2.4E-05 15 27.00 1349 1388
LRR_4 Leucine Rich repeats (2 copies) 2.5E-05 15 27.00 1374 1412
LRR_8 Leucine rich repeat 3.3E-09 27 27.00 1374 1432
LRR_1 Leucine Rich Repeat 0.0078 8 20.60 1397 1415
LRR_4 Leucine Rich repeats (2 copies) 0.0011 10 27.00 1421 1449
Pkinase Protein kinase domain 0 130 20.40 1627 1790
PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase 1.7E-29 93 23.10 1628 1793
Kinase-like Kinase-like 3.6E-05 13 25.00 1718 1769

1798

Peptidase_C6
PAH
WRKY
ABC_tran
Atg31
WRKY
AAA_16
NB-ARC
AFG1_ATPase
TrwB_AAD_bind
ABC_tran
AAA_14
AAA
Pkinase
LRR_8
LRR_3
LRR_8
LRR_4
LRR_8
LRR_1
LRR_4
LRR_3
LRR_1
LRR_8
LRR_4
LRR_4
LRR_8
LRR_1
LRR_4
Pkinase
PK_Tyr_Ser-Thr
Kinase-like

References:

AAA_16

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

LRR_3
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

LRR_1
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

PAH
2233725 The Saccharomyces cerevisiae SIN3 gene, a negative regulator of HO, contains four paired amphipathic helix motifs. Mol Cell Biol 1990;10:5927-5936.

Kinase-like

LRR_8

WRKY
10785665 The WRKY superfamily of plant transcription factors. Trends Plant Sci 2000;5:199-206.

LRR_4

Peptidase_C6

Atg31
17362880 Cis1/Atg31 is required for autophagosome formation in Saccharomyces cerevisiae. Biochem Biophys Res Commun. 2007;356:405-410.

AFG1_ATPase
1441755 AFG1, a new member of the SEC18-NSF, PAS1, CDC48-VCP, TBP family of ATPases. Yeast 1992;8:787-790.
8551518 Cloning, sequencing, and characterization of a complementary DNA from Haematobia irritans irritans (Diptera: Muscidae) that shares significant homology to a yeast ATPase. J Med Entomol 1995;32:906-910.

Pkinase
1956325 Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Methods Enzymol 1991;200:38-62.
7768349 Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 1995;9:576-596.
9020587 The protein kinases of budding yeast: six score and more. Trends Biochem Sci 1997;22:18-22.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

PK_Tyr_Ser-Thr

TrwB_AAD_bind
11214325 The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase. Nature. 2001;409:637-641.
11748238 Conjugative plasmid protein TrwB, an integral membrane type IV secretion system coupling protein. Detailed structural features and mapping of the active site cleft. J Biol Chem. 2002;277:7556-7566.

Domain	Description	Evalue	Bits	GA	Start	End
Peptidase_C6	Helper component proteinase	0.00031	10	25.00	249	300
PAH	Paired amphipathic helix repeat	8.4E-15	45	21.30	324	368
WRKY	WRKY DNA -binding domain	5.7E-24	75	21.00	468	524
ABC_tran	ABC transporter	0.16	3	23.10	538	612
Atg31	Autophagy-related protein 31	0.00098	9	25.00	550	601
WRKY	WRKY DNA -binding domain	2.6E-09	28	21.00	641	661
AAA_16	AAA ATPase domain	2.2E-06	18	32.60	820	933
NB-ARC	NB-ARC domain	7.2E-21	65	23.50	822	1031
AFG1_ATPase	AFG1-like ATPase	0.00011	11	20.20	834	880
TrwB_AAD_bind	Type IV secretion-system coupling protein DNA-binding domain	5.6E-05	12	19.90	835	871
ABC_tran	ABC transporter	0.013	6	23.10	840	871
AAA_14	AAA domain	7.1E-05	13	27.00	840	954
AAA	ATPase family associated with various cellular activities (AAA)	6.1E-05	14	20.80	842	914
Pkinase	Protein kinase domain	0.59	0	20.40	857	910
LRR_8	Leucine rich repeat	0.75	0	27.00	1168	1187
LRR_3	Leucine Rich Repeat	2.2E-08	24	20.20	1228	1247
LRR_8	Leucine rich repeat	0.0038	7	27.00	1255	1292
LRR_4	Leucine Rich repeats (2 copies)	0.0003	12	27.00	1259	1297
LRR_8	Leucine rich repeat	4.7E-05	14	27.00	1282	1338
LRR_1	Leucine Rich Repeat	0.025	6	20.60	1282	1302
LRR_4	Leucine Rich repeats (2 copies)	8.2E-06	17	27.00	1305	1348
LRR_3	Leucine Rich Repeat	0.62	1	20.20	1306	1320
LRR_1	Leucine Rich Repeat	0.0072	8	20.60	1329	1371
LRR_8	Leucine rich repeat	0.0013	9	27.00	1349	1381
LRR_4	Leucine Rich repeats (2 copies)	2.4E-05	15	27.00	1349	1388
LRR_4	Leucine Rich repeats (2 copies)	2.5E-05	15	27.00	1374	1412
LRR_8	Leucine rich repeat	3.3E-09	27	27.00	1374	1432
LRR_1	Leucine Rich Repeat	0.0078	8	20.60	1397	1415
LRR_4	Leucine Rich repeats (2 copies)	0.0011	10	27.00	1421	1449
Pkinase	Protein kinase domain	0	130	20.40	1627	1790
PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	1.7E-29	93	23.10	1628	1793
Kinase-like	Kinase-like	3.6E-05	13	25.00	1718	1769