c2pfam

AT4G12860.1 :

Domain Description Evalue Bits GA Start End
EF-hand_1 EF hand 1.6E-10 30 25.40 5 32
EF-hand_6 EF-hand domain 6.1E-10 29 25.00 6 34
EF-hand_7 EF-hand domain pair 4.4E-15 46 30.00 6 66
Caleosin Caleosin related protein 0.013 6 20.60 6 36
CCD48 Coiled-coil domain-containing protein 48 0.0005 9 30.40 6 77
EF-hand_9 EF-hand domain 3.8E-07 21 37.00 8 63
EF-hand_4 Cytoskeletal-regulatory complex EF hand 0.00029 11 21.30 8 63
EF-hand_14 EF-hand domain 0.00011 13 23.70 8 51
EF-hand_8 EF-hand domain pair 5.3E-05 13 28.00 8 31
EF-hand_5 EF hand 2.5E-09 27 25.90 9 29
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 6.9E-06 17 21.40 9 63
Dockerin_1 Dockerin type I repeat 0.043 4 20.50 11 22
SurA_N_3 SurA N-terminal domain 0.00023 11 27.20 18 80
EF-hand_8 EF-hand domain pair 2.4E-05 14 28.00 25 65
Dockerin_1 Dockerin type I repeat 0.0015 9 20.50 37 58
VCBS Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 0.0033 8 26.90 37 59
Caleosin Caleosin related protein 0.56 0 20.60 40 68
EF-hand_1 EF hand 6.9E-09 25 25.40 41 67
EF-hand_6 EF-hand domain 3.7E-05 14 25.00 42 67
EF-hand_5 EF hand 2.5E-06 17 25.90 42 65
Dockerin_1 Dockerin type I repeat 0.00026 11 20.50 49 96
HyaE Hydrogenase-1 expression protein HyaE 0.00016 12 20.80 64 106
EF-hand_4 Cytoskeletal-regulatory complex EF hand 5.2E-07 20 21.30 75 142
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 5E-06 17 21.40 76 138
EF-hand_7 EF-hand domain pair 1.6E-16 51 30.00 76 142
EF-hand_8 EF-hand domain pair 1.6E-06 18 28.00 76 102
EFhand_Ca_insen Ca2+ insensitive EF hand 5.4E-05 13 20.80 76 103
EF-hand_6 EF-hand domain 3.6E-11 32 25.00 78 107
EF-hand_1 EF hand 1.3E-11 34 25.40 79 106
CCD48 Coiled-coil domain-containing protein 48 0.0087 4 30.40 79 112
EF-hand_5 EF hand 5.1E-10 29 25.90 80 102
Caleosin Caleosin related protein 0.02 5 20.60 81 108
VCBS Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 0.3 2 26.90 82 92
VCBS Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 0.018 6 26.90 82 130
EF-hand_9 EF-hand domain 2.7E-05 15 37.00 82 142
EF-hand_14 EF-hand domain 0.061 4 23.70 83 123
SurA_N_3 SurA N-terminal domain 0.11 2 27.20 84 119
EF-hand_8 EF-hand domain pair 2E-12 37 28.00 91 141
EF-hand_1 EF hand 1E-11 34 25.40 116 142
EF-hand_5 EF hand 1.3E-07 21 25.90 119 141
Dockerin_1 Dockerin type I repeat 0.0051 7 20.50 122 138
EF-hand_6 EF-hand domain 1.9E-06 18 25.00 123 144
Caleosin Caleosin related protein 0.31 1 20.60 125 148

152

EF-hand_1
EF-hand_6
EF-hand_7
Caleosin
CCD48
EF-hand_9
EF-hand_4
EF-hand_14
EF-hand_8
EF-hand_5
SPARC_Ca_bdg
Dockerin_1
SurA_N_3
EF-hand_8
Dockerin_1
VCBS
Caleosin
EF-hand_1
EF-hand_6
EF-hand_5
Dockerin_1
HyaE
EF-hand_4
SPARC_Ca_bdg
EF-hand_7
EF-hand_8
EFhand_Ca_insen
EF-hand_6
EF-hand_1
CCD48
EF-hand_5
Caleosin
VCBS
VCBS
EF-hand_9
EF-hand_14
SurA_N_3
EF-hand_8
EF-hand_1
EF-hand_5
Dockerin_1
EF-hand_6
Caleosin

References:

HyaE
12914940 Assembly of Tat-dependent [NiFe] hydrogenases: identification of precursor-binding accessory proteins. FEBS Lett 2003;549:141-146.

EF-hand_9

SPARC_Ca_bdg
16121393 The C-terminal Ca2+-binding domain of SPARC confers anti-spreading activity to human urothelial cells. J Cell Physiol. 2006;206:211-220.

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_4

CCD48

EF-hand_14

SurA_N_3

EF-hand_1

EF-hand_8

Caleosin
11171180 New insights into the mechanisms of lipid-body biogenesis in plants and other organisms. Biochem Soc Trans 2000;28:710-711.

Dockerin_1
10390637 The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides [In Process Citation] Trends Microbiol 1999;7:275-281.
10898940 Secondary structure and calcium-induced folding of the Clostridium thermocellum dockerin domain determined by NMR spectroscopy. Arch Biochem Biophys 2000;379:237-244.

EFhand_Ca_insen
11573089 Ca2+-independent binding of an EF-hand domain to a novel motif in the alpha-actinin-titin complex. Nat Struct Biol. 2001;8:853-857.

VCBS

Domain	Description	Evalue	Bits	GA	Start	End
EF-hand_1	EF hand	1.6E-10	30	25.40	5	32
EF-hand_6	EF-hand domain	6.1E-10	29	25.00	6	34
EF-hand_7	EF-hand domain pair	4.4E-15	46	30.00	6	66
Caleosin	Caleosin related protein	0.013	6	20.60	6	36
CCD48	Coiled-coil domain-containing protein 48	0.0005	9	30.40	6	77
EF-hand_9	EF-hand domain	3.8E-07	21	37.00	8	63
EF-hand_4	Cytoskeletal-regulatory complex EF hand	0.00029	11	21.30	8	63
EF-hand_14	EF-hand domain	0.00011	13	23.70	8	51
EF-hand_8	EF-hand domain pair	5.3E-05	13	28.00	8	31
EF-hand_5	EF hand	2.5E-09	27	25.90	9	29
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	6.9E-06	17	21.40	9	63
Dockerin_1	Dockerin type I repeat	0.043	4	20.50	11	22
SurA_N_3	SurA N-terminal domain	0.00023	11	27.20	18	80
EF-hand_8	EF-hand domain pair	2.4E-05	14	28.00	25	65
Dockerin_1	Dockerin type I repeat	0.0015	9	20.50	37	58
VCBS	Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella	0.0033	8	26.90	37	59
Caleosin	Caleosin related protein	0.56	0	20.60	40	68
EF-hand_1	EF hand	6.9E-09	25	25.40	41	67
EF-hand_6	EF-hand domain	3.7E-05	14	25.00	42	67
EF-hand_5	EF hand	2.5E-06	17	25.90	42	65
Dockerin_1	Dockerin type I repeat	0.00026	11	20.50	49	96
HyaE	Hydrogenase-1 expression protein HyaE	0.00016	12	20.80	64	106
EF-hand_4	Cytoskeletal-regulatory complex EF hand	5.2E-07	20	21.30	75	142
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	5E-06	17	21.40	76	138
EF-hand_7	EF-hand domain pair	1.6E-16	51	30.00	76	142
EF-hand_8	EF-hand domain pair	1.6E-06	18	28.00	76	102
EFhand_Ca_insen	Ca2+ insensitive EF hand	5.4E-05	13	20.80	76	103
EF-hand_6	EF-hand domain	3.6E-11	32	25.00	78	107
EF-hand_1	EF hand	1.3E-11	34	25.40	79	106
CCD48	Coiled-coil domain-containing protein 48	0.0087	4	30.40	79	112
EF-hand_5	EF hand	5.1E-10	29	25.90	80	102
Caleosin	Caleosin related protein	0.02	5	20.60	81	108
VCBS	Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella	0.3	2	26.90	82	92
VCBS	Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella	0.018	6	26.90	82	130
EF-hand_9	EF-hand domain	2.7E-05	15	37.00	82	142
EF-hand_14	EF-hand domain	0.061	4	23.70	83	123
SurA_N_3	SurA N-terminal domain	0.11	2	27.20	84	119
EF-hand_8	EF-hand domain pair	2E-12	37	28.00	91	141
EF-hand_1	EF hand	1E-11	34	25.40	116	142
EF-hand_5	EF hand	1.3E-07	21	25.90	119	141
Dockerin_1	Dockerin type I repeat	0.0051	7	20.50	122	138
EF-hand_6	EF-hand domain	1.9E-06	18	25.00	123	144
Caleosin	Caleosin related protein	0.31	1	20.60	125	148