c2pfam

AT4G13030.1 :

Domain Description Evalue Bits GA Start End
KAP_NTPase KAP family P-loop domain 5E-05 13 20.00 98 226
AAA_7 P-loop containing dynein motor region 5E-06 16 25.80 99 149
ABC_tran ABC transporter 3.7E-06 18 23.10 101 132
AAA_29 P-loop containing region of AAA domain 3.5E-05 14 27.00 103 129
AAA_16 AAA ATPase domain 4.7E-07 21 32.60 104 143
RsgA_GTPase RsgA GTPase 8.6E-06 16 30.00 105 128
DUF815 Protein of unknown function (DUF815) 0.00011 12 20.10 107 132
AAA_22 AAA domain 0.00028 11 27.00 107 128
Zeta_toxin Zeta toxin 0.00023 11 20.10 107 133
AAA_24 AAA domain 0.00034 11 27.00 107 137
AIG1 AIG1 family 0.00027 10 20.30 108 138
RNA_helicase RNA helicase 7E-05 14 21.50 109 146
AAA_PrkA PrkA AAA domain 1.8E-05 14 19.70 109 134
MMR_HSR1 GTPase of unknown function 5.8E-09 26 24.50 109 238
Dynamin_N Dynamin family 0.0011 9 21.00 109 127
Roc Ras of Complex, Roc, domain of DAPkinase 0.00014 12 27.00 109 128
AAA_5 AAA domain (dynein-related subfamily) 7.1E-05 13 20.80 109 133
AIG1 AIG1 family 0.37 0 20.30 242 284

481

KAP_NTPase
AAA_7
ABC_tran
AAA_29
AAA_16
RsgA_GTPase
DUF815
AAA_22
Zeta_toxin
AAA_24
AIG1
RNA_helicase
AAA_PrkA
MMR_HSR1
Dynamin_N
Roc
AAA_5
AIG1

References:

DUF815

AAA_16

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

RsgA_GTPase

AIG1
8742710 Isolation of Arabidopsis genes that differentiate between resistance responses mediated by the RPS2 and RPM1 disease resistance genes. Plant Cell 1996;8:241-249.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

AAA_7

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

KAP_NTPase
15128444 A novel family of P-loop NTPases with an unusual phyletic distribution and transmembrane segments inserted within the NTPase domain. Genome Biol 2004;5:R30.

AAA_PrkA
8626065 Cloning and characterization of the Bacillus subtilis prkA gene encoding a novel serine protein kinase. Gene 1996;168:55-60.

AAA_29

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA_24

AAA_22

Roc

Domain	Description	Evalue	Bits	GA	Start	End
KAP_NTPase	KAP family P-loop domain	5E-05	13	20.00	98	226
AAA_7	P-loop containing dynein motor region	5E-06	16	25.80	99	149
ABC_tran	ABC transporter	3.7E-06	18	23.10	101	132
AAA_29	P-loop containing region of AAA domain	3.5E-05	14	27.00	103	129
AAA_16	AAA ATPase domain	4.7E-07	21	32.60	104	143
RsgA_GTPase	RsgA GTPase	8.6E-06	16	30.00	105	128
DUF815	Protein of unknown function (DUF815)	0.00011	12	20.10	107	132
AAA_22	AAA domain	0.00028	11	27.00	107	128
Zeta_toxin	Zeta toxin	0.00023	11	20.10	107	133
AAA_24	AAA domain	0.00034	11	27.00	107	137
AIG1	AIG1 family	0.00027	10	20.30	108	138
RNA_helicase	RNA helicase	7E-05	14	21.50	109	146
AAA_PrkA	PrkA AAA domain	1.8E-05	14	19.70	109	134
MMR_HSR1	GTPase of unknown function	5.8E-09	26	24.50	109	238
Dynamin_N	Dynamin family	0.0011	9	21.00	109	127
Roc	Ras of Complex, Roc, domain of DAPkinase	0.00014	12	27.00	109	128
AAA_5	AAA domain (dynein-related subfamily)	7.1E-05	13	20.80	109	133
AIG1	AIG1 family	0.37	0	20.30	242	284