c2pfam

AT4G13650.1 :

Domain Description Evalue Bits GA Start End
PPR_3 Pentatricopeptide repeat domain 0.2 2 25.00 73 96
PPR_2 PPR repeat family 0.047 4 30.00 76 95
PPR PPR repeat 0.92 0 25.00 98 116
RPN7 26S proteasome subunit RPN7 0.055 3 25.30 123 152
PPR_3 Pentatricopeptide repeat domain 0.11 3 25.00 125 151
PPR_2 PPR repeat family 0.00087 9 30.00 126 150
PPR PPR repeat 0.002 8 25.00 130 149
PPR_1 PPR repeat 0.0091 6 23.80 134 146
PPR_1 PPR repeat 0.4 0 23.80 150 178
PPR_2 PPR repeat family 2.8E-10 30 30.00 150 196
PPR PPR repeat 4.6E-05 13 25.00 152 182
PPR_long Pentacotripeptide-repeat region of PRORP 0.00014 11 27.00 165 219
PPR_3 Pentatricopeptide repeat domain 0.12 2 25.00 173 196
PPR_3 Pentatricopeptide repeat domain 0.026 4 25.00 216 248
Mso1_Sec1_bdg Sec1-binding region of Mso1 0.2 1 29.10 220 234
PPR_2 PPR repeat family 0.00091 9 30.00 221 246
PPR PPR repeat 4.2E-05 14 25.00 223 249
PPR_1 PPR repeat 0.0046 7 23.80 226 246
PPR_2 PPR repeat family 9.7E-10 28 30.00 252 298
PPR PPR repeat 1.8E-06 18 25.00 255 283
PPR_1 PPR repeat 0.21 1 23.80 259 279
PPR_3 Pentatricopeptide repeat domain 0.14 2 25.00 260 298
PPR PPR repeat 1 0 25.00 290 318
PPR_3 Pentatricopeptide repeat domain 0.00011 12 25.00 317 351
Mso1_Sec1_bdg Sec1-binding region of Mso1 0.0062 6 29.10 321 333
PPR_2 PPR repeat family 0.0007 10 30.00 322 352
PPR PPR repeat 0.00028 11 25.00 325 352
PPR_1 PPR repeat 6.6E-11 32 23.80 351 380
PPR_3 Pentatricopeptide repeat domain 3.8E-06 17 25.00 352 398
PPR_2 PPR repeat family 1.7E-13 40 30.00 353 398
PPR PPR repeat 3.7E-12 36 25.00 355 384
TPR_7 Tetratricopeptide repeat 0.2 2 27.90 364 382
PPR_long Pentacotripeptide-repeat region of PRORP 0.0081 5 27.00 371 403
ATP13 Mitochondrial ATPase expression 0.04 4 26.70 383 408
RPN7 26S proteasome subunit RPN7 0.029 4 25.30 410 451
PPR PPR repeat 0.027 5 25.00 429 449
TPR_7 Tetratricopeptide repeat 0.89 0 27.90 432 449
PPR_1 PPR repeat 0.74 -1 23.80 454 481
PPR_2 PPR repeat family 4.7E-09 26 30.00 454 500
PPR_3 Pentatricopeptide repeat domain 1.4E-06 18 25.00 454 500
PPR PPR repeat 0.00019 12 25.00 456 482
PPR_long Pentacotripeptide-repeat region of PRORP 6.5E-06 15 27.00 470 547
PPR_1 PPR repeat 0.38 0 23.80 486 497
PPR_3 Pentatricopeptide repeat domain 0.003 7 25.00 518 548
PPR_2 PPR repeat family 0.0067 6 30.00 524 547
PPR PPR repeat 0.00014 12 25.00 527 550
PPR_1 PPR repeat 0.015 5 23.80 530 548
PPR_2 PPR repeat family 1.1E-07 22 30.00 554 592
PPR_3 Pentatricopeptide repeat domain 0.17 2 25.00 555 588
PPR_1 PPR repeat 0.0034 7 23.80 555 582
PPR PPR repeat 1.1E-07 22 25.00 557 587
PPR_long Pentacotripeptide-repeat region of PRORP 0.49 -1 27.00 573 606
RPN7 26S proteasome subunit RPN7 0.92 -1 25.30 629 652
PPR PPR repeat 0.01 6 25.00 630 650
PPR_1 PPR repeat 3.8E-05 13 23.80 656 683
PPR_2 PPR repeat family 1.3E-09 28 30.00 657 700
PPR_3 Pentatricopeptide repeat domain 8.3E-06 16 25.00 658 697
PPR PPR repeat 4.3E-08 23 25.00 659 688
TPR_7 Tetratricopeptide repeat 0.045 4 27.90 659 682
BTAD Bacterial transcriptional activator domain 0.057 4 21.00 659 685
TPR_14 Tetratricopeptide repeat 0.069 4 23.50 659 682
PPR_long Pentacotripeptide-repeat region of PRORP 0.00061 9 27.00 668 742
RPN7 26S proteasome subunit RPN7 0.073 2 25.30 725 767
BTAD Bacterial transcriptional activator domain 0.0094 6 21.00 725 784
Mso1_Sec1_bdg Sec1-binding region of Mso1 0.35 0 29.10 725 739
PPR PPR repeat 6.1E-05 13 25.00 729 752
PPR_2 PPR repeat family 0.002 8 30.00 729 750
PPR_3 Pentatricopeptide repeat domain 0.04 4 25.00 730 769
PPR_1 PPR repeat 0.015 5 23.80 731 748
PPR_long Pentacotripeptide-repeat region of PRORP 0.00049 9 27.00 755 851
PPR_2 PPR repeat family 2.2E-12 37 30.00 756 804
PPR_1 PPR repeat 0.00013 12 23.80 757 784
PPR_3 Pentatricopeptide repeat domain 0.0061 7 25.00 759 803
PPR PPR repeat 8.8E-10 28 25.00 759 788
ATP13 Mitochondrial ATPase expression 0.0063 6 26.70 777 826
PPR PPR repeat 0.0032 8 25.00 798 821
PPR_1 PPR repeat 0.0038 7 23.80 825 855
PPR PPR repeat 0.0018 8 25.00 832 855
PPR_2 PPR repeat family 0.14 2 30.00 834 871
ATP13 Mitochondrial ATPase expression 0.053 3 26.70 848 877
PPR_3 Pentatricopeptide repeat domain 0.07 3 25.00 856 878
PPR PPR repeat 0.36 1 25.00 863 878
PPR_3 Pentatricopeptide repeat domain 0.29 1 25.00 897 927
DYW_deaminase DYW family of nucleic acid deaminases 0 123 31.60 930 1054

1064

PPR_3
PPR_2
PPR
RPN7
PPR_3
PPR_2
PPR
PPR_1
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_3
Mso1_Sec1_bdg
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR
PPR_3
Mso1_Sec1_bdg
PPR_2
PPR
PPR_1
PPR_3
PPR_2
PPR
TPR_7
PPR_long
ATP13
RPN7
PPR
TPR_7
PPR_1
PPR_2
PPR_3
PPR
PPR_long
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR_3
PPR_1
PPR
PPR_long
RPN7
PPR
PPR_1
PPR_2
PPR_3
PPR
TPR_7
BTAD
TPR_14
PPR_long
RPN7
BTAD
Mso1_Sec1_bdg
PPR
PPR_2
PPR_3
PPR_1
PPR_long
PPR_2
PPR_1
PPR_3
PPR
ATP13
PPR
PPR_1
PPR
PPR_2
ATP13
PPR_3
PPR
PPR_3
DYW_deaminase

References:

TPR_7

DYW_deaminase

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

Mso1_Sec1_bdg

BTAD
12625841 New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol 2003;3:3-3.

ATP13

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_3	Pentatricopeptide repeat domain	0.2	2	25.00	73	96
PPR_2	PPR repeat family	0.047	4	30.00	76	95
PPR	PPR repeat	0.92	0	25.00	98	116
RPN7	26S proteasome subunit RPN7	0.055	3	25.30	123	152
PPR_3	Pentatricopeptide repeat domain	0.11	3	25.00	125	151
PPR_2	PPR repeat family	0.00087	9	30.00	126	150
PPR	PPR repeat	0.002	8	25.00	130	149
PPR_1	PPR repeat	0.0091	6	23.80	134	146
PPR_1	PPR repeat	0.4	0	23.80	150	178
PPR_2	PPR repeat family	2.8E-10	30	30.00	150	196
PPR	PPR repeat	4.6E-05	13	25.00	152	182
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00014	11	27.00	165	219
PPR_3	Pentatricopeptide repeat domain	0.12	2	25.00	173	196
PPR_3	Pentatricopeptide repeat domain	0.026	4	25.00	216	248
Mso1_Sec1_bdg	Sec1-binding region of Mso1	0.2	1	29.10	220	234
PPR_2	PPR repeat family	0.00091	9	30.00	221	246
PPR	PPR repeat	4.2E-05	14	25.00	223	249
PPR_1	PPR repeat	0.0046	7	23.80	226	246
PPR_2	PPR repeat family	9.7E-10	28	30.00	252	298
PPR	PPR repeat	1.8E-06	18	25.00	255	283
PPR_1	PPR repeat	0.21	1	23.80	259	279
PPR_3	Pentatricopeptide repeat domain	0.14	2	25.00	260	298
PPR	PPR repeat	1	0	25.00	290	318
PPR_3	Pentatricopeptide repeat domain	0.00011	12	25.00	317	351
Mso1_Sec1_bdg	Sec1-binding region of Mso1	0.0062	6	29.10	321	333
PPR_2	PPR repeat family	0.0007	10	30.00	322	352
PPR	PPR repeat	0.00028	11	25.00	325	352
PPR_1	PPR repeat	6.6E-11	32	23.80	351	380
PPR_3	Pentatricopeptide repeat domain	3.8E-06	17	25.00	352	398
PPR_2	PPR repeat family	1.7E-13	40	30.00	353	398
PPR	PPR repeat	3.7E-12	36	25.00	355	384
TPR_7	Tetratricopeptide repeat	0.2	2	27.90	364	382
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0081	5	27.00	371	403
ATP13	Mitochondrial ATPase expression	0.04	4	26.70	383	408
RPN7	26S proteasome subunit RPN7	0.029	4	25.30	410	451
PPR	PPR repeat	0.027	5	25.00	429	449
TPR_7	Tetratricopeptide repeat	0.89	0	27.90	432	449
PPR_1	PPR repeat	0.74	-1	23.80	454	481
PPR_2	PPR repeat family	4.7E-09	26	30.00	454	500
PPR_3	Pentatricopeptide repeat domain	1.4E-06	18	25.00	454	500
PPR	PPR repeat	0.00019	12	25.00	456	482
PPR_long	Pentacotripeptide-repeat region of PRORP	6.5E-06	15	27.00	470	547
PPR_1	PPR repeat	0.38	0	23.80	486	497
PPR_3	Pentatricopeptide repeat domain	0.003	7	25.00	518	548
PPR_2	PPR repeat family	0.0067	6	30.00	524	547
PPR	PPR repeat	0.00014	12	25.00	527	550
PPR_1	PPR repeat	0.015	5	23.80	530	548
PPR_2	PPR repeat family	1.1E-07	22	30.00	554	592
PPR_3	Pentatricopeptide repeat domain	0.17	2	25.00	555	588
PPR_1	PPR repeat	0.0034	7	23.80	555	582
PPR	PPR repeat	1.1E-07	22	25.00	557	587
PPR_long	Pentacotripeptide-repeat region of PRORP	0.49	-1	27.00	573	606
RPN7	26S proteasome subunit RPN7	0.92	-1	25.30	629	652
PPR	PPR repeat	0.01	6	25.00	630	650
PPR_1	PPR repeat	3.8E-05	13	23.80	656	683
PPR_2	PPR repeat family	1.3E-09	28	30.00	657	700
PPR_3	Pentatricopeptide repeat domain	8.3E-06	16	25.00	658	697
PPR	PPR repeat	4.3E-08	23	25.00	659	688
TPR_7	Tetratricopeptide repeat	0.045	4	27.90	659	682
BTAD	Bacterial transcriptional activator domain	0.057	4	21.00	659	685
TPR_14	Tetratricopeptide repeat	0.069	4	23.50	659	682
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00061	9	27.00	668	742
RPN7	26S proteasome subunit RPN7	0.073	2	25.30	725	767
BTAD	Bacterial transcriptional activator domain	0.0094	6	21.00	725	784
Mso1_Sec1_bdg	Sec1-binding region of Mso1	0.35	0	29.10	725	739
PPR	PPR repeat	6.1E-05	13	25.00	729	752
PPR_2	PPR repeat family	0.002	8	30.00	729	750
PPR_3	Pentatricopeptide repeat domain	0.04	4	25.00	730	769
PPR_1	PPR repeat	0.015	5	23.80	731	748
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00049	9	27.00	755	851
PPR_2	PPR repeat family	2.2E-12	37	30.00	756	804
PPR_1	PPR repeat	0.00013	12	23.80	757	784
PPR_3	Pentatricopeptide repeat domain	0.0061	7	25.00	759	803
PPR	PPR repeat	8.8E-10	28	25.00	759	788
ATP13	Mitochondrial ATPase expression	0.0063	6	26.70	777	826
PPR	PPR repeat	0.0032	8	25.00	798	821
PPR_1	PPR repeat	0.0038	7	23.80	825	855
PPR	PPR repeat	0.0018	8	25.00	832	855
PPR_2	PPR repeat family	0.14	2	30.00	834	871
ATP13	Mitochondrial ATPase expression	0.053	3	26.70	848	877
PPR_3	Pentatricopeptide repeat domain	0.07	3	25.00	856	878
PPR	PPR repeat	0.36	1	25.00	863	878
PPR_3	Pentatricopeptide repeat domain	0.29	1	25.00	897	927
DYW_deaminase	DYW family of nucleic acid deaminases	0	123	31.60	930	1054