c2pfam

AT4G14050.1 :

Domain Description Evalue Bits GA Start End
PPR_long Pentacotripeptide-repeat region of PRORP 0.001 8 27.00 6 165
PPR PPR repeat 8.4E-07 18 25.00 42 67
PPR_2 PPR repeat family 1.2E-05 15 30.00 42 67
PPR_1 PPR repeat 2.4E-05 13 23.80 42 64
PPR_3 Pentatricopeptide repeat domain 0.081 2 25.00 42 64
BTAD Bacterial transcriptional activator domain 0.41 0 21.00 45 64
PPR_2 PPR repeat family 0.00072 9 30.00 68 117
PPR_3 Pentatricopeptide repeat domain 0.34 0 25.00 99 118
PPR_1 PPR repeat 0.018 4 23.80 100 122
PPR PPR repeat 0.043 4 25.00 107 128
PPR PPR repeat 6.8E-05 12 25.00 144 169
PPR_2 PPR repeat family 0.12 2 30.00 144 165
PPR_1 PPR repeat 0.00047 9 23.80 144 165
PPR_2 PPR repeat family 6.4E-07 19 30.00 169 195
PPR_1 PPR repeat 2.4E-06 17 23.80 170 195
PPR_3 Pentatricopeptide repeat domain 0.12 2 25.00 170 194
PPR PPR repeat 2.1E-09 27 25.00 172 196
BTAD Bacterial transcriptional activator domain 0.026 4 21.00 174 195
TPR_14 Tetratricopeptide repeat 0.047 4 23.50 174 197
PPR_2 PPR repeat family 7.8E-09 25 30.00 200 233
PPR_3 Pentatricopeptide repeat domain 6.4E-06 15 25.00 201 233
PPR_1 PPR repeat 9.5E-06 15 23.80 201 229
PPR PPR repeat 1.9E-10 30 25.00 203 232
BTAD Bacterial transcriptional activator domain 0.72 -1 21.00 205 231
PPR_2 PPR repeat family 5.7E-05 13 30.00 272 303
PPR PPR repeat 9.1E-07 18 25.00 277 303
PPR_1 PPR repeat 0.021 4 23.80 277 300
PPR_3 Pentatricopeptide repeat domain 0.038 3 25.00 277 301
DYW_deaminase DYW family of nucleic acid deaminases 0.43 0 31.60 283 304
PPR_1 PPR repeat 2.2E-06 17 23.80 302 331
PPR_2 PPR repeat family 3E-16 49 30.00 302 350
PPR_3 Pentatricopeptide repeat domain 3.8E-07 19 25.00 303 349
PPR PPR repeat 3E-10 29 25.00 305 335
BTAD Bacterial transcriptional activator domain 0.056 3 21.00 307 332
TPR_14 Tetratricopeptide repeat 0.019 5 23.50 310 337
PPR_long Pentacotripeptide-repeat region of PRORP 7.6E-12 34 27.00 316 448
PPR_3 Pentatricopeptide repeat domain 1.3E-08 24 25.00 326 386
PPR_1 PPR repeat 0.00039 9 23.80 334 365
PPR PPR repeat 1E-05 15 25.00 340 367
PPR_2 PPR repeat family 0.036 4 30.00 345 374
PPR_3 Pentatricopeptide repeat domain 0.0045 6 25.00 367 398
PPR_1 PPR repeat 6.9E-07 18 23.80 370 401
PPR_2 PPR repeat family 5.3E-05 13 30.00 377 417
PPR PPR repeat 7.4E-06 15 25.00 378 401
BTAD Bacterial transcriptional activator domain 0.02 4 21.00 389 423
TPR_14 Tetratricopeptide repeat 0.13 3 23.50 409 435
PPR PPR repeat 0.058 3 25.00 409 428
PPR_3 Pentatricopeptide repeat domain 0.3 1 25.00 409 425
PPR PPR repeat 0.37 1 25.00 458 473
PPR_1 PPR repeat 0.2 1 23.80 459 472
DYW_deaminase DYW family of nucleic acid deaminases 0 124 31.60 477 602

612

PPR_long
PPR
PPR_2
PPR_1
PPR_3
BTAD
PPR_2
PPR_3
PPR_1
PPR
PPR
PPR_2
PPR_1
PPR_2
PPR_1
PPR_3
PPR
BTAD
TPR_14
PPR_2
PPR_3
PPR_1
PPR
BTAD
PPR_2
PPR
PPR_1
PPR_3
DYW_deaminase
PPR_1
PPR_2
PPR_3
PPR
BTAD
TPR_14
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
BTAD
TPR_14
PPR
PPR_3
PPR
PPR_1
DYW_deaminase

References:

DYW_deaminase

BTAD
12625841 New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol 2003;3:3-3.

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_long	Pentacotripeptide-repeat region of PRORP	0.001	8	27.00	6	165
PPR	PPR repeat	8.4E-07	18	25.00	42	67
PPR_2	PPR repeat family	1.2E-05	15	30.00	42	67
PPR_1	PPR repeat	2.4E-05	13	23.80	42	64
PPR_3	Pentatricopeptide repeat domain	0.081	2	25.00	42	64
BTAD	Bacterial transcriptional activator domain	0.41	0	21.00	45	64
PPR_2	PPR repeat family	0.00072	9	30.00	68	117
PPR_3	Pentatricopeptide repeat domain	0.34	0	25.00	99	118
PPR_1	PPR repeat	0.018	4	23.80	100	122
PPR	PPR repeat	0.043	4	25.00	107	128
PPR	PPR repeat	6.8E-05	12	25.00	144	169
PPR_2	PPR repeat family	0.12	2	30.00	144	165
PPR_1	PPR repeat	0.00047	9	23.80	144	165
PPR_2	PPR repeat family	6.4E-07	19	30.00	169	195
PPR_1	PPR repeat	2.4E-06	17	23.80	170	195
PPR_3	Pentatricopeptide repeat domain	0.12	2	25.00	170	194
PPR	PPR repeat	2.1E-09	27	25.00	172	196
BTAD	Bacterial transcriptional activator domain	0.026	4	21.00	174	195
TPR_14	Tetratricopeptide repeat	0.047	4	23.50	174	197
PPR_2	PPR repeat family	7.8E-09	25	30.00	200	233
PPR_3	Pentatricopeptide repeat domain	6.4E-06	15	25.00	201	233
PPR_1	PPR repeat	9.5E-06	15	23.80	201	229
PPR	PPR repeat	1.9E-10	30	25.00	203	232
BTAD	Bacterial transcriptional activator domain	0.72	-1	21.00	205	231
PPR_2	PPR repeat family	5.7E-05	13	30.00	272	303
PPR	PPR repeat	9.1E-07	18	25.00	277	303
PPR_1	PPR repeat	0.021	4	23.80	277	300
PPR_3	Pentatricopeptide repeat domain	0.038	3	25.00	277	301
DYW_deaminase	DYW family of nucleic acid deaminases	0.43	0	31.60	283	304
PPR_1	PPR repeat	2.2E-06	17	23.80	302	331
PPR_2	PPR repeat family	3E-16	49	30.00	302	350
PPR_3	Pentatricopeptide repeat domain	3.8E-07	19	25.00	303	349
PPR	PPR repeat	3E-10	29	25.00	305	335
BTAD	Bacterial transcriptional activator domain	0.056	3	21.00	307	332
TPR_14	Tetratricopeptide repeat	0.019	5	23.50	310	337
PPR_long	Pentacotripeptide-repeat region of PRORP	7.6E-12	34	27.00	316	448
PPR_3	Pentatricopeptide repeat domain	1.3E-08	24	25.00	326	386
PPR_1	PPR repeat	0.00039	9	23.80	334	365
PPR	PPR repeat	1E-05	15	25.00	340	367
PPR_2	PPR repeat family	0.036	4	30.00	345	374
PPR_3	Pentatricopeptide repeat domain	0.0045	6	25.00	367	398
PPR_1	PPR repeat	6.9E-07	18	23.80	370	401
PPR_2	PPR repeat family	5.3E-05	13	30.00	377	417
PPR	PPR repeat	7.4E-06	15	25.00	378	401
BTAD	Bacterial transcriptional activator domain	0.02	4	21.00	389	423
TPR_14	Tetratricopeptide repeat	0.13	3	23.50	409	435
PPR	PPR repeat	0.058	3	25.00	409	428
PPR_3	Pentatricopeptide repeat domain	0.3	1	25.00	409	425
PPR	PPR repeat	0.37	1	25.00	458	473
PPR_1	PPR repeat	0.2	1	23.80	459	472
DYW_deaminase	DYW family of nucleic acid deaminases	0	124	31.60	477	602