c2pfam

AT4G14640.1 :

Domain Description Evalue Bits GA Start End
Caleosin Caleosin related protein 0.0016 9 20.60 12 44
EF-hand_7 EF-hand domain pair 4.3E-18 56 30.00 13 74
EF-hand_4 Cytoskeletal-regulatory complex EF hand 0.00019 12 21.30 13 74
EF-hand_1 EF hand 1.3E-11 34 25.40 13 41
EF-hand_6 EF-hand domain 1.2E-10 31 25.00 13 41
GPHH Voltage-dependent L-type calcium channel, IQ-associated 0.0083 7 26.80 13 41
EF-hand_5 EF hand 5.1E-07 20 25.90 16 37
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 2E-05 15 21.40 16 71
EF-hand_9 EF-hand domain 7E-09 27 37.00 17 76
EF-hand_8 EF-hand domain pair 0.0055 7 28.00 17 34
EF-hand_11 EF-hand domain 0.07 5 21.70 18 76
YtzH YtzH-like protein 0.93 1 27.00 20 39
Dockerin_1 Dockerin type I repeat 0.012 6 20.50 21 66
EF-hand_8 EF-hand domain pair 1.9E-13 41 28.00 26 76
RNA_pol_Rpb4 RNA polymerase Rpb4 0.00011 13 21.60 28 58
DUF4315 Domain of unknown function (DUF4315) 0.00017 12 27.00 32 86
DUF5580 Family of unknown function (DUF5580) 6.7E-07 19 83.40 46 147
Caleosin Caleosin related protein 0.16 2 20.60 47 83
Spore_III_AB Stage III sporulation protein AB (spore_III_AB) 5.7E-05 14 24.90 48 131
AAA_assoc_C C-terminal AAA-associated domain 6.8E-05 14 27.60 48 89
EF-hand_1 EF hand 4.2E-09 26 25.40 49 76
EF-hand_6 EF-hand domain 0.0001 13 25.00 50 76
YtzH YtzH-like protein 5.4E-05 14 27.00 50 112
EF-hand_5 EF hand 0.00021 11 25.90 56 74
Poly_export Polysaccharide biosynthesis/export protein 0.0011 10 20.60 60 94
RNA_pol_Rpb4 RNA polymerase Rpb4 0.92 0 21.60 69 95
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 1.3E-06 19 21.40 79 145
EFhand_Ca_insen Ca2+ insensitive EF hand 0.00011 13 20.80 82 142
EF-hand_7 EF-hand domain pair 3.2E-22 69 30.00 84 147
EF-hand_8 EF-hand domain pair 2.9E-05 14 28.00 84 107
EF-hand_4 Cytoskeletal-regulatory complex EF hand 1.7E-08 25 21.30 85 147
EF-hand_6 EF-hand domain 3.8E-10 30 25.00 86 113
EF-hand_1 EF hand 1.5E-11 34 25.40 86 112
EF-hand_5 EF hand 8.1E-09 25 25.90 87 111
Caleosin Caleosin related protein 0.0061 7 20.60 87 115
EF-hand_11 EF-hand domain 0.00027 12 21.70 89 145
EF-hand_9 EF-hand domain 3.5E-08 24 37.00 90 148
GPHH Voltage-dependent L-type calcium channel, IQ-associated 0.37 1 26.80 94 110
Dockerin_1 Dockerin type I repeat 0.00023 12 20.50 95 139
RNA_pol_Rpb4 RNA polymerase Rpb4 0.0039 8 21.60 103 129
EF-hand_8 EF-hand domain pair 1.2E-12 38 28.00 106 147
Poly_export Polysaccharide biosynthesis/export protein 0.53 1 20.60 117 130
EF-hand_1 EF hand 1E-11 34 25.40 122 148
EF-hand_5 EF hand 5.5E-07 20 25.90 125 147
EF-hand_6 EF-hand domain 7.4E-06 16 25.00 128 147

151

Caleosin
EF-hand_7
EF-hand_4
EF-hand_1
EF-hand_6
GPHH
EF-hand_5
SPARC_Ca_bdg
EF-hand_9
EF-hand_8
EF-hand_11
YtzH
Dockerin_1
EF-hand_8
RNA_pol_Rpb4
DUF4315
DUF5580
Caleosin
Spore_III_AB
AAA_assoc_C
EF-hand_1
EF-hand_6
YtzH
EF-hand_5
Poly_export
RNA_pol_Rpb4
SPARC_Ca_bdg
EFhand_Ca_insen
EF-hand_7
EF-hand_8
EF-hand_4
EF-hand_6
EF-hand_1
EF-hand_5
Caleosin
EF-hand_11
EF-hand_9
GPHH
Dockerin_1
RNA_pol_Rpb4
EF-hand_8
Poly_export
EF-hand_1
EF-hand_5
EF-hand_6

References:

DUF5580

EFhand_Ca_insen
11573089 Ca2+-independent binding of an EF-hand domain to a novel motif in the alpha-actinin-titin complex. Nat Struct Biol. 2001;8:853-857.

EF-hand_9

YtzH

EF-hand_7

EF-hand_6

EF-hand_5

GPHH

Spore_III_AB

AAA_assoc_C

EF-hand_11

EF-hand_1

EF-hand_8

SPARC_Ca_bdg
16121393 The C-terminal Ca2+-binding domain of SPARC confers anti-spreading activity to human urothelial cells. J Cell Physiol. 2006;206:211-220.

Caleosin
11171180 New insights into the mechanisms of lipid-body biogenesis in plants and other organisms. Biochem Soc Trans 2000;28:710-711.

Dockerin_1
10390637 The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides [In Process Citation] Trends Microbiol 1999;7:275-281.
10898940 Secondary structure and calcium-induced folding of the Clostridium thermocellum dockerin domain determined by NMR spectroscopy. Arch Biochem Biophys 2000;379:237-244.

DUF4315

EF-hand_4

RNA_pol_Rpb4
11741548 Structure of an archaeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex. Mol Cell 2001;8:1137-1143.
12482973 An Rpb4/Rpb7-like complex in yeast RNA polymerase III contains the orthologue of mammalian CGRP-RCP. Mol Cell Biol. 2003;23:195-205.
8065349 C25, an essential RNA polymerase III subunit related to the RNA polymerase II subunit RPB7. Mol Cell Biol. 1994;14:6164-6170.
12482973 An Rpb4/Rpb7-like complex in yeast RNA polymerase III contains the orthologue of mammalian CGRP-RCP. Mol Cell Biol. 2003;23:195-205.
16818233 Structural biology of RNA polymerase III: subcomplex C17/25 X-ray structure and 11 subunit enzyme model. Mol Cell. 2006;23:71-81.

Poly_export
8759852 Organization of the Escherichia coli K-12 gene cluster responsible for production of the extracellular polysaccharide colanic acid. J Bacteriol 1996;178:4885-4893.

Domain	Description	Evalue	Bits	GA	Start	End
Caleosin	Caleosin related protein	0.0016	9	20.60	12	44
EF-hand_7	EF-hand domain pair	4.3E-18	56	30.00	13	74
EF-hand_4	Cytoskeletal-regulatory complex EF hand	0.00019	12	21.30	13	74
EF-hand_1	EF hand	1.3E-11	34	25.40	13	41
EF-hand_6	EF-hand domain	1.2E-10	31	25.00	13	41
GPHH	Voltage-dependent L-type calcium channel, IQ-associated	0.0083	7	26.80	13	41
EF-hand_5	EF hand	5.1E-07	20	25.90	16	37
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	2E-05	15	21.40	16	71
EF-hand_9	EF-hand domain	7E-09	27	37.00	17	76
EF-hand_8	EF-hand domain pair	0.0055	7	28.00	17	34
EF-hand_11	EF-hand domain	0.07	5	21.70	18	76
YtzH	YtzH-like protein	0.93	1	27.00	20	39
Dockerin_1	Dockerin type I repeat	0.012	6	20.50	21	66
EF-hand_8	EF-hand domain pair	1.9E-13	41	28.00	26	76
RNA_pol_Rpb4	RNA polymerase Rpb4	0.00011	13	21.60	28	58
DUF4315	Domain of unknown function (DUF4315)	0.00017	12	27.00	32	86
DUF5580	Family of unknown function (DUF5580)	6.7E-07	19	83.40	46	147
Caleosin	Caleosin related protein	0.16	2	20.60	47	83
Spore_III_AB	Stage III sporulation protein AB (spore_III_AB)	5.7E-05	14	24.90	48	131
AAA_assoc_C	C-terminal AAA-associated domain	6.8E-05	14	27.60	48	89
EF-hand_1	EF hand	4.2E-09	26	25.40	49	76
EF-hand_6	EF-hand domain	0.0001	13	25.00	50	76
YtzH	YtzH-like protein	5.4E-05	14	27.00	50	112
EF-hand_5	EF hand	0.00021	11	25.90	56	74
Poly_export	Polysaccharide biosynthesis/export protein	0.0011	10	20.60	60	94
RNA_pol_Rpb4	RNA polymerase Rpb4	0.92	0	21.60	69	95
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	1.3E-06	19	21.40	79	145
EFhand_Ca_insen	Ca2+ insensitive EF hand	0.00011	13	20.80	82	142
EF-hand_7	EF-hand domain pair	3.2E-22	69	30.00	84	147
EF-hand_8	EF-hand domain pair	2.9E-05	14	28.00	84	107
EF-hand_4	Cytoskeletal-regulatory complex EF hand	1.7E-08	25	21.30	85	147
EF-hand_6	EF-hand domain	3.8E-10	30	25.00	86	113
EF-hand_1	EF hand	1.5E-11	34	25.40	86	112
EF-hand_5	EF hand	8.1E-09	25	25.90	87	111
Caleosin	Caleosin related protein	0.0061	7	20.60	87	115
EF-hand_11	EF-hand domain	0.00027	12	21.70	89	145
EF-hand_9	EF-hand domain	3.5E-08	24	37.00	90	148
GPHH	Voltage-dependent L-type calcium channel, IQ-associated	0.37	1	26.80	94	110
Dockerin_1	Dockerin type I repeat	0.00023	12	20.50	95	139
RNA_pol_Rpb4	RNA polymerase Rpb4	0.0039	8	21.60	103	129
EF-hand_8	EF-hand domain pair	1.2E-12	38	28.00	106	147
Poly_export	Polysaccharide biosynthesis/export protein	0.53	1	20.60	117	130
EF-hand_1	EF hand	1E-11	34	25.40	122	148
EF-hand_5	EF hand	5.5E-07	20	25.90	125	147
EF-hand_6	EF-hand domain	7.4E-06	16	25.00	128	147