c2pfam

AT1G19310.1 :

Domain Description Evalue Bits GA Start End
Baculo_IE-1 Baculovirus immediate-early protein (IE-0) 7.2E-05 13 25.30 17 68
zf-Nse Zinc-finger of the MIZ type in Nse subunit 0.00012 12 20.70 18 63
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 1.6E-12 37 27.00 21 68
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 5.6E-12 36 27.00 22 63
zf-RING_2 Ring finger domain 1.1E-11 35 27.30 22 64
zf-RING_5 zinc-RING finger domain 3.1E-10 30 27.90 22 64
zf-RING_6 zf-RING of BARD1-type protein 0.00043 10 35.00 22 64
zf-RING_10 zinc RING finger of MSL2 5.5E-05 14 31.00 22 69
zf-rbx1 RING-H2 zinc finger domain 2.2E-05 15 31.00 23 64
zf-C3HC4_4 zinc finger of C3HC4-type, RING 1.7E-09 28 30.00 23 63
Prok-RING_4 Prokaryotic RING finger family 4 1.1E-07 22 27.00 23 68
zf-RING_UBOX RING-type zinc-finger 4.4E-11 33 25.20 23 54
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 5.1E-12 36 21.00 23 63
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 7E-07 20 21.40 34 66
IBR IBR domain 0.0071 7 23.60 35 57
zf-RING_13 RING/Ubox like zinc-binding domain 0.38 1 25.00 36 57
IBR IBR domain 0.35 1 23.60 56 70
zf-RING_UBOX RING-type zinc-finger 0.25 2 25.20 60 67
zf-RING_13 RING/Ubox like zinc-binding domain 0.00074 10 25.00 165 196
12TM_1 Membrane protein of 12 TMs 3E-05 13 33.20 195 225

226

Baculo_IE-1
zf-Nse
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-RING_5
zf-RING_6
zf-RING_10
zf-rbx1
zf-C3HC4_4
Prok-RING_4
zf-RING_UBOX
zf-C3HC4
zf-ANAPC11
IBR
zf-RING_13
IBR
zf-RING_UBOX
zf-RING_13
12TM_1

References:

12TM_1

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

zf-C3HC4_2

Baculo_IE-1
9188574 A mechanism for negative gene regulation in Autographa californica multinucleocapsid nuclear polyhedrosis virus. J Virol 1997;71:5088-5094.

zf-ANAPC11

zf-RING_UBOX

zf-RING_6

zf-RING_5

zf-RING_2

zf-rbx1

zf-RING_13

IBR
10366851 A novel transactivation domain in parkin. Trends Biochem Sci 1999;24:229-231.
10422847 TRIADs: a new class of proteins with a novel cysteine-rich signature. Protein Sci 1999;8:1557-1561.
15152079 Parkin and relatives: the RBR family of ubiquitin ligases. Physiol Genomics 2004;17:253-263.
12446796 Comparative genomics of the RBR family, including the Parkinson's disease-related gene parkin and the genes of the ariadne subfamily. Mol Biol Evol 2002;19:2039-2050.

zf-RING_10

zf-C3HC4_3

Prok-RING_4

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

zf-C3HC4_4

Domain	Description	Evalue	Bits	GA	Start	End
Baculo_IE-1	Baculovirus immediate-early protein (IE-0)	7.2E-05	13	25.30	17	68
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	0.00012	12	20.70	18	63
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	1.6E-12	37	27.00	21	68
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	5.6E-12	36	27.00	22	63
zf-RING_2	Ring finger domain	1.1E-11	35	27.30	22	64
zf-RING_5	zinc-RING finger domain	3.1E-10	30	27.90	22	64
zf-RING_6	zf-RING of BARD1-type protein	0.00043	10	35.00	22	64
zf-RING_10	zinc RING finger of MSL2	5.5E-05	14	31.00	22	69
zf-rbx1	RING-H2 zinc finger domain	2.2E-05	15	31.00	23	64
zf-C3HC4_4	zinc finger of C3HC4-type, RING	1.7E-09	28	30.00	23	63
Prok-RING_4	Prokaryotic RING finger family 4	1.1E-07	22	27.00	23	68
zf-RING_UBOX	RING-type zinc-finger	4.4E-11	33	25.20	23	54
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	5.1E-12	36	21.00	23	63
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	7E-07	20	21.40	34	66
IBR	IBR domain	0.0071	7	23.60	35	57
zf-RING_13	RING/Ubox like zinc-binding domain	0.38	1	25.00	36	57
IBR	IBR domain	0.35	1	23.60	56	70
zf-RING_UBOX	RING-type zinc-finger	0.25	2	25.20	60	67
zf-RING_13	RING/Ubox like zinc-binding domain	0.00074	10	25.00	165	196
12TM_1	Membrane protein of 12 TMs	3E-05	13	33.20	195	225