c2pfam

AT4G14850.1 :

Domain Description Evalue Bits GA Start End
PPR PPR repeat 0.012 5 25.00 46 65
PPR_2 PPR repeat family 0.37 0 30.00 46 61
PPR_2 PPR repeat family 4.5E-13 39 30.00 71 119
PPR_1 PPR repeat 1E-05 14 23.80 72 99
PPR_3 Pentatricopeptide repeat domain 1.5E-05 14 25.00 72 111
PPR PPR repeat 5.3E-08 22 25.00 74 104
PPR_1 PPR repeat 0.53 -1 23.80 103 111
PPR_1 PPR repeat 0.0083 5 23.80 151 168
PPR PPR repeat 0.00036 10 25.00 151 173
PPR_2 PPR repeat family 0.0011 8 30.00 151 175
TPR_19 Tetratricopeptide repeat 0.12 2 25.00 152 173
PPR_3 Pentatricopeptide repeat domain 0.0021 7 25.00 173 220
PPR_1 PPR repeat 0.53 -1 23.80 173 197
PPR_2 PPR repeat family 3.8E-08 23 30.00 173 219
PPR PPR repeat 0.00042 10 25.00 176 202
PPR_1 PPR repeat 0.7 -1 23.80 206 218
PPR_3 Pentatricopeptide repeat domain 0.094 2 25.00 237 271
PPR_2 PPR repeat family 0.0064 6 30.00 243 273
PPR PPR repeat 0.0022 8 25.00 246 272
PPR_2 PPR repeat family 0.1 2 30.00 273 299
PPR PPR repeat 0.0047 7 25.00 276 299
PPR PPR repeat 2.2E-06 17 25.00 349 375
PPR_2 PPR repeat family 0.01 5 30.00 350 376
PPR_1 PPR repeat 0.005 6 23.80 350 371
PPR_2 PPR repeat family 1.4E-12 37 30.00 374 423
PPR_1 PPR repeat 6E-07 18 23.80 375 402
PPR_3 Pentatricopeptide repeat domain 2.8E-05 13 25.00 375 410
PPR PPR repeat 2.7E-09 26 25.00 377 402
PPR_long Pentacotripeptide-repeat region of PRORP 7E-07 18 27.00 381 475
TPR_4 Tetratricopeptide repeat 0.008 6 22.00 386 401
TPR_19 Tetratricopeptide repeat 0.23 1 25.00 389 402
PPR_1 PPR repeat 0.00025 10 23.80 408 440
PPR_3 Pentatricopeptide repeat domain 1.4E-06 18 25.00 411 460
PPR_2 PPR repeat family 1.7E-06 17 30.00 411 459
PPR PPR repeat 3.6E-06 16 25.00 415 441
PPR_1 PPR repeat 8.6E-08 21 23.80 444 475
PPR PPR repeat 9.3E-06 15 25.00 451 475
PPR_2 PPR repeat family 0.005 6 30.00 452 475
PPR_3 Pentatricopeptide repeat domain 0.59 -1 25.00 470 491
TPR_19 Tetratricopeptide repeat 0.01 6 25.00 503 535
TPR_4 Tetratricopeptide repeat 0.068 4 22.00 519 535
PPR PPR repeat 0.44 0 25.00 525 546
DYW_deaminase DYW family of nucleic acid deaminases 0 130 31.60 551 674
PPR_2 PPR repeat family 0.27 1 30.00 583 596
PPR_long Pentacotripeptide-repeat region of PRORP 0.38 -1 27.00 592 620

684

PPR
PPR_2
PPR_2
PPR_1
PPR_3
PPR
PPR_1
PPR_1
PPR
PPR_2
TPR_19
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_2
PPR
PPR
PPR_2
PPR_1
PPR_2
PPR_1
PPR_3
PPR
PPR_long
TPR_4
TPR_19
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
TPR_19
TPR_4
PPR
DYW_deaminase
PPR_2
PPR_long

References:

TPR_19

DYW_deaminase

TPR_4

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR	PPR repeat	0.012	5	25.00	46	65
PPR_2	PPR repeat family	0.37	0	30.00	46	61
PPR_2	PPR repeat family	4.5E-13	39	30.00	71	119
PPR_1	PPR repeat	1E-05	14	23.80	72	99
PPR_3	Pentatricopeptide repeat domain	1.5E-05	14	25.00	72	111
PPR	PPR repeat	5.3E-08	22	25.00	74	104
PPR_1	PPR repeat	0.53	-1	23.80	103	111
PPR_1	PPR repeat	0.0083	5	23.80	151	168
PPR	PPR repeat	0.00036	10	25.00	151	173
PPR_2	PPR repeat family	0.0011	8	30.00	151	175
TPR_19	Tetratricopeptide repeat	0.12	2	25.00	152	173
PPR_3	Pentatricopeptide repeat domain	0.0021	7	25.00	173	220
PPR_1	PPR repeat	0.53	-1	23.80	173	197
PPR_2	PPR repeat family	3.8E-08	23	30.00	173	219
PPR	PPR repeat	0.00042	10	25.00	176	202
PPR_1	PPR repeat	0.7	-1	23.80	206	218
PPR_3	Pentatricopeptide repeat domain	0.094	2	25.00	237	271
PPR_2	PPR repeat family	0.0064	6	30.00	243	273
PPR	PPR repeat	0.0022	8	25.00	246	272
PPR_2	PPR repeat family	0.1	2	30.00	273	299
PPR	PPR repeat	0.0047	7	25.00	276	299
PPR	PPR repeat	2.2E-06	17	25.00	349	375
PPR_2	PPR repeat family	0.01	5	30.00	350	376
PPR_1	PPR repeat	0.005	6	23.80	350	371
PPR_2	PPR repeat family	1.4E-12	37	30.00	374	423
PPR_1	PPR repeat	6E-07	18	23.80	375	402
PPR_3	Pentatricopeptide repeat domain	2.8E-05	13	25.00	375	410
PPR	PPR repeat	2.7E-09	26	25.00	377	402
PPR_long	Pentacotripeptide-repeat region of PRORP	7E-07	18	27.00	381	475
TPR_4	Tetratricopeptide repeat	0.008	6	22.00	386	401
TPR_19	Tetratricopeptide repeat	0.23	1	25.00	389	402
PPR_1	PPR repeat	0.00025	10	23.80	408	440
PPR_3	Pentatricopeptide repeat domain	1.4E-06	18	25.00	411	460
PPR_2	PPR repeat family	1.7E-06	17	30.00	411	459
PPR	PPR repeat	3.6E-06	16	25.00	415	441
PPR_1	PPR repeat	8.6E-08	21	23.80	444	475
PPR	PPR repeat	9.3E-06	15	25.00	451	475
PPR_2	PPR repeat family	0.005	6	30.00	452	475
PPR_3	Pentatricopeptide repeat domain	0.59	-1	25.00	470	491
TPR_19	Tetratricopeptide repeat	0.01	6	25.00	503	535
TPR_4	Tetratricopeptide repeat	0.068	4	22.00	519	535
PPR	PPR repeat	0.44	0	25.00	525	546
DYW_deaminase	DYW family of nucleic acid deaminases	0	130	31.60	551	674
PPR_2	PPR repeat family	0.27	1	30.00	583	596
PPR_long	Pentacotripeptide-repeat region of PRORP	0.38	-1	27.00	592	620