c2pfam

AT4G15420.1 :

Domain Description Evalue Bits GA Start End
UFD1 Ubiquitin fusion degradation protein UFD1 0 161 35.60 90 251
PPC Bacterial pre-peptidase C-terminal domain 0.00014 12 24.80 304 365
Big_3_3 Bacterial Ig-like domain (group 3) 0.00011 11 27.00 305 334
VATC Vms1-associating treble clef domain 0.17 1 26.60 399 410
zf_UBZ Ubiquitin-Binding Zinc Finger 0.0019 7 25.60 399 418
zf-TRAF TRAF-type zinc finger 0.0017 8 20.90 400 446
VATC Vms1-associating treble clef domain 0.0017 7 26.60 444 459
zf-TRAF TRAF-type zinc finger 0.031 4 20.90 445 466
zf_UBZ Ubiquitin-Binding Zinc Finger 0.00017 10 25.60 447 465
zf-TRAF TRAF-type zinc finger 2.1E-07 20 20.90 470 509
VATC Vms1-associating treble clef domain 0.8 -2 26.60 497 506
zf-TRAF TRAF-type zinc finger 0.0097 6 20.90 526 552
VATC Vms1-associating treble clef domain 0.05 2 26.60 533 543
zf_UBZ Ubiquitin-Binding Zinc Finger 0.01 4 25.60 535 553

561

UFD1
PPC
Big_3_3
VATC
zf_UBZ
zf-TRAF
VATC
zf-TRAF
zf_UBZ
zf-TRAF
VATC
zf-TRAF
VATC
zf_UBZ

References:

Big_3_3

zf-TRAF

PPC
12625841 New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol 2003;3:3-3.

zf_UBZ

VATC

UFD1
7615550 A proteolytic pathway that recognizes ubiquitin as a degradation signal. J Biol Chem 1995;270:17442-17456.
9063746 UFD1L, a developmentally expressed ubiquitination gene, is deleted in CATCH 22 syndrome. Hum Mol Genet 1997;6:259-265.

Domain	Description	Evalue	Bits	GA	Start	End
UFD1	Ubiquitin fusion degradation protein UFD1	0	161	35.60	90	251
PPC	Bacterial pre-peptidase C-terminal domain	0.00014	12	24.80	304	365
Big_3_3	Bacterial Ig-like domain (group 3)	0.00011	11	27.00	305	334
VATC	Vms1-associating treble clef domain	0.17	1	26.60	399	410
zf_UBZ	Ubiquitin-Binding Zinc Finger	0.0019	7	25.60	399	418
zf-TRAF	TRAF-type zinc finger	0.0017	8	20.90	400	446
VATC	Vms1-associating treble clef domain	0.0017	7	26.60	444	459
zf-TRAF	TRAF-type zinc finger	0.031	4	20.90	445	466
zf_UBZ	Ubiquitin-Binding Zinc Finger	0.00017	10	25.60	447	465
zf-TRAF	TRAF-type zinc finger	2.1E-07	20	20.90	470	509
VATC	Vms1-associating treble clef domain	0.8	-2	26.60	497	506
zf-TRAF	TRAF-type zinc finger	0.0097	6	20.90	526	552
VATC	Vms1-associating treble clef domain	0.05	2	26.60	533	543
zf_UBZ	Ubiquitin-Binding Zinc Finger	0.01	4	25.60	535	553