c2pfam

AT4G16470.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.048 3 30.00 83 117
PPR PPR repeat 0.0078 6 25.00 84 99
PPR_1 PPR repeat 0.0032 6 23.80 84 99
PPR_3 Pentatricopeptide repeat domain 0.044 3 25.00 102 134
PPR_long Pentacotripeptide-repeat region of PRORP 0.018 3 27.00 110 157
PPR_3 Pentatricopeptide repeat domain 0.5 -1 25.00 138 169
PPR_3 Pentatricopeptide repeat domain 3.9E-05 13 25.00 173 219
PPR_1 PPR repeat 0.096 1 23.80 175 188
PPR_2 PPR repeat family 4.7E-11 32 30.00 177 219
PPR PPR repeat 2.7E-08 23 25.00 177 204
PPR_long Pentacotripeptide-repeat region of PRORP 0.0028 6 27.00 191 233
PPR_1 PPR repeat 0.46 -1 23.80 205 213
PPR PPR repeat 0.33 0 25.00 211 238
PPR PPR repeat 0.04 3 25.00 248 274
PPR_2 PPR repeat family 0.12 2 30.00 249 275
PPR_2 PPR repeat family 9.2E-18 53 30.00 273 320
PPR_1 PPR repeat 2.9E-07 19 23.80 273 302
PPR_3 Pentatricopeptide repeat domain 5E-13 38 25.00 274 320
PPR PPR repeat 5.9E-13 37 25.00 276 306
PPR_long Pentacotripeptide-repeat region of PRORP 6.6E-05 11 27.00 291 367
PPR_1 PPR repeat 0.047 2 23.80 305 313
PPR PPR repeat 0.00063 9 25.00 311 339
PPR_2 PPR repeat family 0.047 3 30.00 324 354
PPR_3 Pentatricopeptide repeat domain 0.12 1 25.00 340 370
PPR_1 PPR repeat 2.7E-05 13 23.80 341 369
PPR_2 PPR repeat family 0.086 2 30.00 349 370
PPR PPR repeat 0.0026 7 25.00 349 368
PPR PPR repeat 0.53 0 25.00 380 394
PPR PPR repeat 0.0019 7 25.00 418 443
PPR_2 PPR repeat family 0.039 3 30.00 420 446
PPR_3 Pentatricopeptide repeat domain 0.15 1 25.00 420 444
PPR_1 PPR repeat 0.14 1 23.80 420 439
DYW_deaminase DYW family of nucleic acid deaminases 3E-05 13 31.60 447 493

501

PPR_2
PPR
PPR_1
PPR_3
PPR_long
PPR_3
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR
PPR
PPR_2
PPR_2
PPR_1
PPR_3
PPR
PPR_long
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR
PPR
PPR_2
PPR_3
PPR_1
DYW_deaminase

References:

DYW_deaminase

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.048	3	30.00	83	117
PPR	PPR repeat	0.0078	6	25.00	84	99
PPR_1	PPR repeat	0.0032	6	23.80	84	99
PPR_3	Pentatricopeptide repeat domain	0.044	3	25.00	102	134
PPR_long	Pentacotripeptide-repeat region of PRORP	0.018	3	27.00	110	157
PPR_3	Pentatricopeptide repeat domain	0.5	-1	25.00	138	169
PPR_3	Pentatricopeptide repeat domain	3.9E-05	13	25.00	173	219
PPR_1	PPR repeat	0.096	1	23.80	175	188
PPR_2	PPR repeat family	4.7E-11	32	30.00	177	219
PPR	PPR repeat	2.7E-08	23	25.00	177	204
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0028	6	27.00	191	233
PPR_1	PPR repeat	0.46	-1	23.80	205	213
PPR	PPR repeat	0.33	0	25.00	211	238
PPR	PPR repeat	0.04	3	25.00	248	274
PPR_2	PPR repeat family	0.12	2	30.00	249	275
PPR_2	PPR repeat family	9.2E-18	53	30.00	273	320
PPR_1	PPR repeat	2.9E-07	19	23.80	273	302
PPR_3	Pentatricopeptide repeat domain	5E-13	38	25.00	274	320
PPR	PPR repeat	5.9E-13	37	25.00	276	306
PPR_long	Pentacotripeptide-repeat region of PRORP	6.6E-05	11	27.00	291	367
PPR_1	PPR repeat	0.047	2	23.80	305	313
PPR	PPR repeat	0.00063	9	25.00	311	339
PPR_2	PPR repeat family	0.047	3	30.00	324	354
PPR_3	Pentatricopeptide repeat domain	0.12	1	25.00	340	370
PPR_1	PPR repeat	2.7E-05	13	23.80	341	369
PPR_2	PPR repeat family	0.086	2	30.00	349	370
PPR	PPR repeat	0.0026	7	25.00	349	368
PPR	PPR repeat	0.53	0	25.00	380	394
PPR	PPR repeat	0.0019	7	25.00	418	443
PPR_2	PPR repeat family	0.039	3	30.00	420	446
PPR_3	Pentatricopeptide repeat domain	0.15	1	25.00	420	444
PPR_1	PPR repeat	0.14	1	23.80	420	439
DYW_deaminase	DYW family of nucleic acid deaminases	3E-05	13	31.60	447	493