c2pfam

AT4G16680.1 :

Domain Description Evalue Bits GA Start End
AAA_11 AAA domain 0.33 1 27.00 15 101
AAA_30 AAA domain 0.89 0 27.00 79 123
AAA_23 AAA domain 0.00017 13 27.00 221 246
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.00021 12 26.60 222 258
AAA_11 AAA domain 0.0086 6 27.00 222 268
DEAD DEAD/DEAH box helicase 3.7E-10 30 20.60 222 374
T2SSE Type II/IV secretion system protein 0.00012 12 24.90 222 255
PhoH PhoH-like protein 0.00027 11 20.10 222 245
ATPase_2 ATPase domain predominantly from Archaea 0.0004 11 33.20 223 276
AAA_29 P-loop containing region of AAA domain 0.00055 10 27.00 225 247
AAA_7 P-loop containing dynein motor region 6.3E-05 13 25.80 226 256
ABC_tran ABC transporter 5.5E-05 14 23.10 228 263
ResIII Type III restriction enzyme, res subunit 0.017 6 20.90 229 246
AAA_30 AAA domain 9.3E-09 26 27.00 229 357
AAA_19 AAA domain 1.6E-06 19 25.10 230 353
AAA_22 AAA domain 2E-09 28 27.00 230 350
Flavi_DEAD Flavivirus DEAD domain 2.7E-06 18 20.70 231 338
AAA_24 AAA domain 0.00025 11 27.00 231 337
AAA_14 AAA domain 0.0026 8 27.00 231 352
DUF2075 Uncharacterized conserved protein (DUF2075) 1E-05 15 20.30 232 339
SRP54 SRP54-type protein, GTPase domain 3.8E-05 14 20.50 232 370
Helicase_RecD Helicase 0.00017 12 22.70 235 351
ResIII Type III restriction enzyme, res subunit 0.0076 7 20.90 322 341
AAA_11 AAA domain 0.79 0 27.00 326 338
ATPase_2 ATPase domain predominantly from Archaea 0.031 5 33.20 379 459
Helicase_C Helicase conserved C-terminal domain 5.4E-17 53 20.90 415 545

656

AAA_11
AAA_30
AAA_23
TsaE
AAA_11
DEAD
T2SSE
PhoH
ATPase_2
AAA_29
AAA_7
ABC_tran
ResIII
AAA_30
AAA_19
AAA_22
Flavi_DEAD
AAA_24
AAA_14
DUF2075
SRP54
Helicase_RecD
ResIII
AAA_11
ATPase_2
Helicase_C

References:

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

Flavi_DEAD

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_14

AAA_11

TsaE

DUF2075

T2SSE

SRP54
9002525 Crystal structure of the NG domain from the signal-recognition particle receptor FtsY. Nature 1997;385:365-368.

Helicase_C

PhoH
8444794 Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993;175:1316-1324.

AAA_7

ATPase_2

AAA_30

AAA_29

Helicase_RecD

AAA_24

AAA_23

AAA_22

AAA_19

ResIII

Domain	Description	Evalue	Bits	GA	Start	End
AAA_11	AAA domain	0.33	1	27.00	15	101
AAA_30	AAA domain	0.89	0	27.00	79	123
AAA_23	AAA domain	0.00017	13	27.00	221	246
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.00021	12	26.60	222	258
AAA_11	AAA domain	0.0086	6	27.00	222	268
DEAD	DEAD/DEAH box helicase	3.7E-10	30	20.60	222	374
T2SSE	Type II/IV secretion system protein	0.00012	12	24.90	222	255
PhoH	PhoH-like protein	0.00027	11	20.10	222	245
ATPase_2	ATPase domain predominantly from Archaea	0.0004	11	33.20	223	276
AAA_29	P-loop containing region of AAA domain	0.00055	10	27.00	225	247
AAA_7	P-loop containing dynein motor region	6.3E-05	13	25.80	226	256
ABC_tran	ABC transporter	5.5E-05	14	23.10	228	263
ResIII	Type III restriction enzyme, res subunit	0.017	6	20.90	229	246
AAA_30	AAA domain	9.3E-09	26	27.00	229	357
AAA_19	AAA domain	1.6E-06	19	25.10	230	353
AAA_22	AAA domain	2E-09	28	27.00	230	350
Flavi_DEAD	Flavivirus DEAD domain	2.7E-06	18	20.70	231	338
AAA_24	AAA domain	0.00025	11	27.00	231	337
AAA_14	AAA domain	0.0026	8	27.00	231	352
DUF2075	Uncharacterized conserved protein (DUF2075)	1E-05	15	20.30	232	339
SRP54	SRP54-type protein, GTPase domain	3.8E-05	14	20.50	232	370
Helicase_RecD	Helicase	0.00017	12	22.70	235	351
ResIII	Type III restriction enzyme, res subunit	0.0076	7	20.90	322	341
AAA_11	AAA domain	0.79	0	27.00	326	338
ATPase_2	ATPase domain predominantly from Archaea	0.031	5	33.20	379	459
Helicase_C	Helicase conserved C-terminal domain	5.4E-17	53	20.90	415	545