c2pfam

AT4G16860.1 :

Domain Description Evalue Bits GA Start End
TIR TIR domain 0 156 21.20 13 175
TIR_2 TIR domain 8.6E-14 42 28.00 15 110
AAA_16 AAA ATPase domain 6.9E-06 17 32.60 185 240
NB-ARC NB-ARC domain 8E-20 61 23.50 189 418
KAP_NTPase KAP family P-loop domain 0.00089 9 20.00 192 264
RsgA_GTPase RsgA GTPase 0.00034 11 30.00 207 233
ABC_tran ABC transporter 0.00019 12 23.10 209 233
NTPase_1 NTPase 0.00019 11 23.90 210 288
MMR_HSR1 GTPase of unknown function 9.9E-05 13 24.50 210 249
RNA_helicase RNA helicase 0.00036 11 21.50 212 244
AAA ATPase family associated with various cellular activities (AAA) 2.4E-05 15 20.80 212 299
AAA_22 AAA domain 2.9E-08 24 27.00 212 305
KAP_NTPase KAP family P-loop domain 0.29 0 20.00 285 332
NB-ARC NB-ARC domain 0.54 -1 23.50 449 512
LRR_8 Leucine rich repeat 0.00025 11 27.00 535 558
LRR_4 Leucine Rich repeats (2 copies) 0.78 1 27.00 544 557
LRR_3 Leucine Rich Repeat 5.5E-11 32 20.20 608 626
LRR_4 Leucine Rich repeats (2 copies) 6.6E-05 14 27.00 631 665
LRR_8 Leucine rich repeat 0.0009 9 27.00 631 684
LRR_8 Leucine rich repeat 0.026 5 27.00 654 707
LRR_1 Leucine Rich Repeat 0.0016 9 20.60 654 675
LRR_4 Leucine Rich repeats (2 copies) 3.3E-05 15 27.00 678 706
LRR_3 Leucine Rich Repeat 7.5E-10 29 20.20 745 764
LRR_8 Leucine rich repeat 0.14 2 27.00 746 800
LRR_8 Leucine rich repeat 0.13 2 27.00 768 824
LRR_4 Leucine Rich repeats (2 copies) 0.21 2 27.00 769 800
LRR_1 Leucine Rich Repeat 0.016 6 20.60 791 812
LRR_8 Leucine rich repeat 0.074 3 27.00 807 847
LRR_4 Leucine Rich repeats (2 copies) 9.4E-06 16 27.00 814 854
LRR_1 Leucine Rich Repeat 0.0062 8 20.60 838 851
LRR_1 Leucine Rich Repeat 0.78 1 20.60 906 916
LRR_3 Leucine Rich Repeat 8.5E-05 13 20.20 906 924
LRR_8 Leucine rich repeat 0.00013 12 27.00 923 960
LRR_4 Leucine Rich repeats (2 copies) 5.6E-05 14 27.00 929 962
LRR_1 Leucine Rich Repeat 0.0042 8 20.60 951 973
LRR_4 Leucine Rich repeats (2 copies) 0.17 3 27.00 995 1013
LRR_8 Leucine rich repeat 0.81 0 27.00 995 1006
LRR_1 Leucine Rich Repeat 0.071 4 20.60 998 1011
LRR_4 Leucine Rich repeats (2 copies) 0.037 5 27.00 1019 1058
LRR_8 Leucine rich repeat 0.76 0 27.00 1022 1047

1147

TIR
TIR_2
AAA_16
NB-ARC
KAP_NTPase
RsgA_GTPase
ABC_tran
NTPase_1
MMR_HSR1
RNA_helicase
AAA
AAA_22
KAP_NTPase
NB-ARC
LRR_8
LRR_4
LRR_3
LRR_4
LRR_8
LRR_8
LRR_1
LRR_4
LRR_3
LRR_8
LRR_8
LRR_4
LRR_1
LRR_8
LRR_4
LRR_1
LRR_1
LRR_3
LRR_8
LRR_4
LRR_1
LRR_4
LRR_8
LRR_1
LRR_4
LRR_8

References:

AAA_16

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

RsgA_GTPase

LRR_3
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

LRR_1
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

LRR_8

NTPase_1

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

KAP_NTPase
15128444 A novel family of P-loop NTPases with an unusual phyletic distribution and transmembrane segments inserted within the NTPase domain. Genome Biol 2004;5:R30.

TIR_2

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

TIR
9013863 The cloning and characterization of human MyD88: a member of an IL-1 receptor related family. FEBS Lett 1997;402:81-84.
9237759 A human homologue of the Drosophila Toll protein signals activation of adaptive immunity [see comments] Nature 1997;388:394-397.
12186654 Toll-like receptors: a family of pattern-recognition receptors in mammals. Genome Biol 2002;3:REVIEWS3011.

AAA_22

LRR_4

Domain	Description	Evalue	Bits	GA	Start	End
TIR	TIR domain	0	156	21.20	13	175
TIR_2	TIR domain	8.6E-14	42	28.00	15	110
AAA_16	AAA ATPase domain	6.9E-06	17	32.60	185	240
NB-ARC	NB-ARC domain	8E-20	61	23.50	189	418
KAP_NTPase	KAP family P-loop domain	0.00089	9	20.00	192	264
RsgA_GTPase	RsgA GTPase	0.00034	11	30.00	207	233
ABC_tran	ABC transporter	0.00019	12	23.10	209	233
NTPase_1	NTPase	0.00019	11	23.90	210	288
MMR_HSR1	GTPase of unknown function	9.9E-05	13	24.50	210	249
RNA_helicase	RNA helicase	0.00036	11	21.50	212	244
AAA	ATPase family associated with various cellular activities (AAA)	2.4E-05	15	20.80	212	299
AAA_22	AAA domain	2.9E-08	24	27.00	212	305
KAP_NTPase	KAP family P-loop domain	0.29	0	20.00	285	332
NB-ARC	NB-ARC domain	0.54	-1	23.50	449	512
LRR_8	Leucine rich repeat	0.00025	11	27.00	535	558
LRR_4	Leucine Rich repeats (2 copies)	0.78	1	27.00	544	557
LRR_3	Leucine Rich Repeat	5.5E-11	32	20.20	608	626
LRR_4	Leucine Rich repeats (2 copies)	6.6E-05	14	27.00	631	665
LRR_8	Leucine rich repeat	0.0009	9	27.00	631	684
LRR_8	Leucine rich repeat	0.026	5	27.00	654	707
LRR_1	Leucine Rich Repeat	0.0016	9	20.60	654	675
LRR_4	Leucine Rich repeats (2 copies)	3.3E-05	15	27.00	678	706
LRR_3	Leucine Rich Repeat	7.5E-10	29	20.20	745	764
LRR_8	Leucine rich repeat	0.14	2	27.00	746	800
LRR_8	Leucine rich repeat	0.13	2	27.00	768	824
LRR_4	Leucine Rich repeats (2 copies)	0.21	2	27.00	769	800
LRR_1	Leucine Rich Repeat	0.016	6	20.60	791	812
LRR_8	Leucine rich repeat	0.074	3	27.00	807	847
LRR_4	Leucine Rich repeats (2 copies)	9.4E-06	16	27.00	814	854
LRR_1	Leucine Rich Repeat	0.0062	8	20.60	838	851
LRR_1	Leucine Rich Repeat	0.78	1	20.60	906	916
LRR_3	Leucine Rich Repeat	8.5E-05	13	20.20	906	924
LRR_8	Leucine rich repeat	0.00013	12	27.00	923	960
LRR_4	Leucine Rich repeats (2 copies)	5.6E-05	14	27.00	929	962
LRR_1	Leucine Rich Repeat	0.0042	8	20.60	951	973
LRR_4	Leucine Rich repeats (2 copies)	0.17	3	27.00	995	1013
LRR_8	Leucine rich repeat	0.81	0	27.00	995	1006
LRR_1	Leucine Rich Repeat	0.071	4	20.60	998	1011
LRR_4	Leucine Rich repeats (2 copies)	0.037	5	27.00	1019	1058
LRR_8	Leucine rich repeat	0.76	0	27.00	1022	1047