c2pfam

AT4G16950.1 :

Domain Description Evalue Bits GA Start End
TIR TIR domain 0 161 21.20 12 190
TIR_2 TIR domain 4.2E-14 43 28.00 14 109
Kinase-PPPase Kinase/pyrophosphorylase 0.00025 11 23.40 53 103
DUF815 Protein of unknown function (DUF815) 0.00015 11 20.10 185 235
AAA_16 AAA ATPase domain 1.1E-06 19 32.60 188 236
NB-ARC NB-ARC domain 8.6E-19 58 23.50 192 425
ABC_tran ABC transporter 9.2E-05 13 23.10 206 233
RsgA_GTPase RsgA GTPase 0.00023 11 30.00 208 235
AAA_22 AAA domain 3.3E-07 21 27.00 208 307
AAA_23 AAA domain 0.0095 7 27.00 210 229
AAA ATPase family associated with various cellular activities (AAA) 2.7E-05 15 20.80 214 301
LRR_8 Leucine rich repeat 0.0018 8 27.00 541 558
LRR_1 Leucine Rich Repeat 0.38 2 20.60 575 592
LRR_3 Leucine Rich Repeat 7.2E-11 32 20.20 597 615
LRR_8 Leucine rich repeat 0.0015 9 27.00 598 652
LRR_4 Leucine Rich repeats (2 copies) 0.00052 11 27.00 626 655
LRR_1 Leucine Rich Repeat 0.00065 11 20.60 643 664
Matrilin_ccoil Trimeric coiled-coil oligomerisation domain of matrilin 0.5 1 20.50 652 667
LRR_4 Leucine Rich repeats (2 copies) 9.2E-05 13 27.00 667 697
LRR_1 Leucine Rich Repeat 0.99 1 20.60 712 729
LRR_3 Leucine Rich Repeat 2.7E-09 27 20.20 734 753
LRR_1 Leucine Rich Repeat 0.77 1 20.60 780 800
LRR_8 Leucine rich repeat 0.00026 11 27.00 780 836
Matrilin_ccoil Trimeric coiled-coil oligomerisation domain of matrilin 2.8E-05 14 20.50 783 804
LRR_1 Leucine Rich Repeat 0.39 2 20.60 804 814
LRR_4 Leucine Rich repeats (2 copies) 1.5E-06 19 27.00 804 843
LRR_1 Leucine Rich Repeat 0.0081 7 20.60 827 840
LRR_3 Leucine Rich Repeat 1.4E-10 31 20.20 894 913
LRR_8 Leucine rich repeat 0.00016 12 27.00 913 949
LRR_4 Leucine Rich repeats (2 copies) 8.9E-06 16 27.00 917 951
LRR_8 Leucine rich repeat 0.0023 8 27.00 939 996
LRR_1 Leucine Rich Repeat 0.001 10 20.60 940 962
LRR_4 Leucine Rich repeats (2 copies) 0.0016 9 27.00 975 1002
LRR_8 Leucine rich repeat 0.072 3 27.00 984 996
LRR_1 Leucine Rich Repeat 0.0053 8 20.60 987 1002
LRR_4 Leucine Rich repeats (2 copies) 0.033 5 27.00 1008 1041
LRR_4 Leucine Rich repeats (2 copies) 0.0002 12 27.00 1029 1063
LRR_8 Leucine rich repeat 0.0017 8 27.00 1030 1086
LRR_1 Leucine Rich Repeat 0.088 4 20.60 1030 1052
LRR_4 Leucine Rich repeats (2 copies) 0.0016 9 27.00 1053 1092
LRR_1 Leucine Rich Repeat 0.47 2 20.60 1080 1088
LRR_4 Leucine Rich repeats (2 copies) 0.09 4 27.00 1098 1137
AAA_23 AAA domain 0.078 4 27.00 1326 1383

1449

TIR
TIR_2
Kinase-PPPase
DUF815
AAA_16
NB-ARC
ABC_tran
RsgA_GTPase
AAA_22
AAA_23
AAA
LRR_8
LRR_1
LRR_3
LRR_8
LRR_4
LRR_1
Matrilin_ccoil
LRR_4
LRR_1
LRR_3
LRR_1
LRR_8
Matrilin_ccoil
LRR_1
LRR_4
LRR_1
LRR_3
LRR_8
LRR_4
LRR_8
LRR_1
LRR_4
LRR_8
LRR_1
LRR_4
LRR_4
LRR_8
LRR_1
LRR_4
LRR_1
LRR_4
AAA_23

References:

DUF815

AAA_16

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

RsgA_GTPase

LRR_3
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

LRR_1
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

Kinase-PPPase

LRR_8

Matrilin_ccoil
9260286 Heteronuclear NMR assignments and secondary structure of the coiled coil trimerization domain from cartilage matrix protein in oxidized and reduced forms. Protein Sci. 1997;6:1734-1745.
9287130 Primary structure of matrilin-3, a new member of a family of extracellular matrix proteins related to cartilage matrix protein (matrilin-1) and von Willebrand factor. FEBS Lett. 1997;413:129-134.

LRR_4

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

TIR_2

TIR
9013863 The cloning and characterization of human MyD88: a member of an IL-1 receptor related family. FEBS Lett 1997;402:81-84.
9237759 A human homologue of the Drosophila Toll protein signals activation of adaptive immunity [see comments] Nature 1997;388:394-397.
12186654 Toll-like receptors: a family of pattern-recognition receptors in mammals. Genome Biol 2002;3:REVIEWS3011.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_23

AAA_22

Domain	Description	Evalue	Bits	GA	Start	End
TIR	TIR domain	0	161	21.20	12	190
TIR_2	TIR domain	4.2E-14	43	28.00	14	109
Kinase-PPPase	Kinase/pyrophosphorylase	0.00025	11	23.40	53	103
DUF815	Protein of unknown function (DUF815)	0.00015	11	20.10	185	235
AAA_16	AAA ATPase domain	1.1E-06	19	32.60	188	236
NB-ARC	NB-ARC domain	8.6E-19	58	23.50	192	425
ABC_tran	ABC transporter	9.2E-05	13	23.10	206	233
RsgA_GTPase	RsgA GTPase	0.00023	11	30.00	208	235
AAA_22	AAA domain	3.3E-07	21	27.00	208	307
AAA_23	AAA domain	0.0095	7	27.00	210	229
AAA	ATPase family associated with various cellular activities (AAA)	2.7E-05	15	20.80	214	301
LRR_8	Leucine rich repeat	0.0018	8	27.00	541	558
LRR_1	Leucine Rich Repeat	0.38	2	20.60	575	592
LRR_3	Leucine Rich Repeat	7.2E-11	32	20.20	597	615
LRR_8	Leucine rich repeat	0.0015	9	27.00	598	652
LRR_4	Leucine Rich repeats (2 copies)	0.00052	11	27.00	626	655
LRR_1	Leucine Rich Repeat	0.00065	11	20.60	643	664
Matrilin_ccoil	Trimeric coiled-coil oligomerisation domain of matrilin	0.5	1	20.50	652	667
LRR_4	Leucine Rich repeats (2 copies)	9.2E-05	13	27.00	667	697
LRR_1	Leucine Rich Repeat	0.99	1	20.60	712	729
LRR_3	Leucine Rich Repeat	2.7E-09	27	20.20	734	753
LRR_1	Leucine Rich Repeat	0.77	1	20.60	780	800
LRR_8	Leucine rich repeat	0.00026	11	27.00	780	836
Matrilin_ccoil	Trimeric coiled-coil oligomerisation domain of matrilin	2.8E-05	14	20.50	783	804
LRR_1	Leucine Rich Repeat	0.39	2	20.60	804	814
LRR_4	Leucine Rich repeats (2 copies)	1.5E-06	19	27.00	804	843
LRR_1	Leucine Rich Repeat	0.0081	7	20.60	827	840
LRR_3	Leucine Rich Repeat	1.4E-10	31	20.20	894	913
LRR_8	Leucine rich repeat	0.00016	12	27.00	913	949
LRR_4	Leucine Rich repeats (2 copies)	8.9E-06	16	27.00	917	951
LRR_8	Leucine rich repeat	0.0023	8	27.00	939	996
LRR_1	Leucine Rich Repeat	0.001	10	20.60	940	962
LRR_4	Leucine Rich repeats (2 copies)	0.0016	9	27.00	975	1002
LRR_8	Leucine rich repeat	0.072	3	27.00	984	996
LRR_1	Leucine Rich Repeat	0.0053	8	20.60	987	1002
LRR_4	Leucine Rich repeats (2 copies)	0.033	5	27.00	1008	1041
LRR_4	Leucine Rich repeats (2 copies)	0.0002	12	27.00	1029	1063
LRR_8	Leucine rich repeat	0.0017	8	27.00	1030	1086
LRR_1	Leucine Rich Repeat	0.088	4	20.60	1030	1052
LRR_4	Leucine Rich repeats (2 copies)	0.0016	9	27.00	1053	1092
LRR_1	Leucine Rich Repeat	0.47	2	20.60	1080	1088
LRR_4	Leucine Rich repeats (2 copies)	0.09	4	27.00	1098	1137
AAA_23	AAA domain	0.078	4	27.00	1326	1383