c2pfam

AT4G16990.1 :

Domain Description Evalue Bits GA Start End
TIR TIR domain 0 174 21.20 9 183
TIR_2 TIR domain 1.2E-12 38 28.00 11 106
AAA_16 AAA ATPase domain 2.7E-05 14 32.60 181 243
NB-ARC NB-ARC domain 1.2E-15 47 23.50 185 407
ATPase_2 ATPase domain predominantly from Archaea 0.0002 11 33.20 188 270
ABC_tran ABC transporter 0.00028 11 23.10 195 228
AAA_22 AAA domain 3.6E-07 20 27.00 200 302
Pox_A32 Poxvirus A32 protein 3.8E-07 20 20.50 203 307
AAA_14 AAA domain 8E-05 13 27.00 203 313
PRK Phosphoribulokinase / Uridine kinase family 0.00022 11 20.60 204 237
AAA_18 AAA domain 6E-08 23 29.40 205 254
AAA ATPase family associated with various cellular activities (AAA) 7.9E-05 13 20.80 207 293
BRX Transcription factor regulating root and shoot growth via Pin3 1.1E-17 53 24.50 434 485
BRX Transcription factor regulating root and shoot growth via Pin3 1.4E-22 69 24.50 537 592

670

TIR
TIR_2
AAA_16
NB-ARC
ATPase_2
ABC_tran
AAA_22
Pox_A32
AAA_14
PRK
AAA_18
AAA
BRX
BRX

References:

AAA_16

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

BRX

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

PRK
9548738 The crystal structure of phosphoribulokinase from Rhodobacter sphaeroides reveals a fold similar to that of adenylate kinase. Biochemistry 1998;37:5074-5085.
17143579 Functional characterization of a gene encoding a dual domain for uridine kinase and uracil phosphoribosyltransferase in Arabidopsis thaliana. Plant Mol Biol. 2007;63:465-477.

ATPase_2

TIR_2

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

TIR
9013863 The cloning and characterization of human MyD88: a member of an IL-1 receptor related family. FEBS Lett 1997;402:81-84.
9237759 A human homologue of the Drosophila Toll protein signals activation of adaptive immunity [see comments] Nature 1997;388:394-397.
12186654 Toll-like receptors: a family of pattern-recognition receptors in mammals. Genome Biol 2002;3:REVIEWS3011.

AAA_22

Pox_A32
9621036 DNA packaging mutant: repression of the vaccinia virus A32 gene results in noninfectious, DNA-deficient, spherical, enveloped particles. J Virol 1998;72:5769-5780.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
TIR	TIR domain	0	174	21.20	9	183
TIR_2	TIR domain	1.2E-12	38	28.00	11	106
AAA_16	AAA ATPase domain	2.7E-05	14	32.60	181	243
NB-ARC	NB-ARC domain	1.2E-15	47	23.50	185	407
ATPase_2	ATPase domain predominantly from Archaea	0.0002	11	33.20	188	270
ABC_tran	ABC transporter	0.00028	11	23.10	195	228
AAA_22	AAA domain	3.6E-07	20	27.00	200	302
Pox_A32	Poxvirus A32 protein	3.8E-07	20	20.50	203	307
AAA_14	AAA domain	8E-05	13	27.00	203	313
PRK	Phosphoribulokinase / Uridine kinase family	0.00022	11	20.60	204	237
AAA_18	AAA domain	6E-08	23	29.40	205	254
AAA	ATPase family associated with various cellular activities (AAA)	7.9E-05	13	20.80	207	293
BRX	Transcription factor regulating root and shoot growth via Pin3	1.1E-17	53	24.50	434	485
BRX	Transcription factor regulating root and shoot growth via Pin3	1.4E-22	69	24.50	537	592