c2pfam

AT4G17160.1 :

Domain Description Evalue Bits GA Start End
Arf ADP-ribosylation factor family 2.4E-16 50 20.30 6 129
Ras Ras family 0 211 20.80 8 168
Roc Ras of Complex, Roc, domain of DAPkinase 1.2E-35 112 27.00 8 123
AAA_24 AAA domain 0.00011 12 27.00 8 54
ABC_tran ABC transporter 0.00024 12 23.10 8 57
AAA_29 P-loop containing region of AAA domain 0.00031 10 27.00 9 23
RsgA_GTPase RsgA GTPase 7.6E-06 16 30.00 9 64
Gtr1_RagA Gtr1/RagA G protein conserved region 1.4E-06 18 20.10 9 128
MMR_HSR1 GTPase of unknown function 2.2E-08 24 24.50 10 110
AAA_22 AAA domain 5E-05 14 27.00 10 30
GTP_EFTU Elongation factor Tu GTP binding domain 1.3E-05 15 20.20 45 135
TetR_C_16 Tetracyclin repressor-like, C-terminal domain 0.00017 12 26.20 57 118
CPT Chloramphenicol phosphotransferase-like protein 3.2E-05 14 21.00 65 157
Alpha_TIF Alpha trans-inducing protein (Alpha-TIF) 4.5E-05 13 25.00 70 197
RsgA_GTPase RsgA GTPase 0.0047 7 30.00 108 158

205

Arf
Ras
Roc
AAA_24
ABC_tran
AAA_29
RsgA_GTPase
Gtr1_RagA
MMR_HSR1
AAA_22
GTP_EFTU
TetR_C_16
CPT
Alpha_TIF
RsgA_GTPase

References:

Alpha_TIF
1653757 Nucleotide and deduced amino acid sequences of the gene encoding virion protein 16 of herpes simplex virus type 2. Gene 1991;103:235-238.

GTP_EFTU
9311785 Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature 1997;389:403-406.

CPT
11468347 Structural basis for chloramphenicol tolerance in Streptomyces venezuelae by chloramphenicol phosphotransferase activity. Protein Sci 2001;10:1508-1513.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

RsgA_GTPase

Ras
11387043 The Rab GTPase family. Genome Biol 2001;2:REVIEWS3007.

TetR_C_16

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

Arf
7990966 Structure of the human ADP-ribosylation factor 1 complexed with GDP. Nature 1994;372:704-708.
7759471 Structure and function of ARF proteins: Activators of cholera toxin and critical components of intracellular vesicular transport processes. J. Biol. Chem. 1995;270:12327-12330.
7770914 Arf proteins: the membrane traffic police? Trends Biochem Sci 1995;20:147-150.
1899243 Human ADP-ribosylation factors. A functionally conserved family of GTP-binding proteins. J Biol Chem 1991;266:2606-2614.

Roc

AAA_29

AAA_24

AAA_22

Gtr1_RagA
1620108 Putative GTP-binding protein, Gtr1, associated with the function of the Pho84 inorganic phosphate transporter in Saccharomyces cerevisiae. Mol Cell Biol 1992;12:2958-2966.
7499430 Cloning of a novel family of mammalian GTP-binding proteins (RagA, RagBs, RagB1) with remote similarity to the Ras-related GTPases. J Biol Chem 1995;270:28982-28988.
10388807 Saccharomyces cerevisiae putative G protein, Gtr1p, which forms complexes with itself and a novel protein designated as Gtr2p, negatively regulates the Ran/Gsp1p G protein cycle through Gtr2p. Genetics 1999;152:853-867.
11073942 Novel G proteins, Rag C and Rag D, interact with GTP-binding proteins, Rag A and Rag B. J Biol Chem 2001;276:7246-7257.

Domain	Description	Evalue	Bits	GA	Start	End
Arf	ADP-ribosylation factor family	2.4E-16	50	20.30	6	129
Ras	Ras family	0	211	20.80	8	168
Roc	Ras of Complex, Roc, domain of DAPkinase	1.2E-35	112	27.00	8	123
AAA_24	AAA domain	0.00011	12	27.00	8	54
ABC_tran	ABC transporter	0.00024	12	23.10	8	57
AAA_29	P-loop containing region of AAA domain	0.00031	10	27.00	9	23
RsgA_GTPase	RsgA GTPase	7.6E-06	16	30.00	9	64
Gtr1_RagA	Gtr1/RagA G protein conserved region	1.4E-06	18	20.10	9	128
MMR_HSR1	GTPase of unknown function	2.2E-08	24	24.50	10	110
AAA_22	AAA domain	5E-05	14	27.00	10	30
GTP_EFTU	Elongation factor Tu GTP binding domain	1.3E-05	15	20.20	45	135
TetR_C_16	Tetracyclin repressor-like, C-terminal domain	0.00017	12	26.20	57	118
CPT	Chloramphenicol phosphotransferase-like protein	3.2E-05	14	21.00	65	157
Alpha_TIF	Alpha trans-inducing protein (Alpha-TIF)	4.5E-05	13	25.00	70	197
RsgA_GTPase	RsgA GTPase	0.0047	7	30.00	108	158