c2pfam

AT4G18750.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.0035 8 30.00 65 104
PPR PPR repeat 0.1 3 25.00 70 84
PPR_1 PPR repeat 0.0027 7 23.80 71 84
RPN7 26S proteasome subunit RPN7 0.14 2 25.30 134 155
TPR_8 Tetratricopeptide repeat 0.23 2 25.70 135 153
TPR_14 Tetratricopeptide repeat 0.49 2 23.50 137 154
PPR_3 Pentatricopeptide repeat domain 0.016 5 25.00 139 158
PPR PPR repeat 0.013 6 25.00 139 156
PPR_2 PPR repeat family 0.11 3 30.00 139 156
PPR_1 PPR repeat 0.008 6 23.80 142 154
MNE1 Mitochondrial splicing apparatus component 0.0035 7 22.70 159 189
PPR_2 PPR repeat family 1.5E-10 31 30.00 162 205
PPR PPR repeat 2.9E-07 20 25.00 163 191
PPR_1 PPR repeat 0.048 3 23.80 163 186
PPR_long Pentacotripeptide-repeat region of PRORP 1.6E-05 14 27.00 167 300
Mtf2 Mtf2 family 0.07 3 27.00 176 210
PPR_1 PPR repeat 0.59 0 23.80 190 201
AEP1 ATPase expression protein 1 0.0017 7 27.00 232 272
PPR PPR repeat 1.5E-05 15 25.00 234 260
PPR_2 PPR repeat family 7.8E-06 16 30.00 234 260
PPR_3 Pentatricopeptide repeat domain 0.024 5 25.00 235 273
TPR_14 Tetratricopeptide repeat 0.042 5 23.50 236 259
TPR_19 Tetratricopeptide repeat 0.13 3 25.00 236 259
PPR_1 PPR repeat 0.00046 10 23.80 242 257
PPR_3 Pentatricopeptide repeat domain 0.067 3 25.00 258 291
PPR_1 PPR repeat 1.5E-05 15 23.80 259 287
PPR_2 PPR repeat family 1E-10 32 30.00 259 307
PPR PPR repeat 8.1E-10 28 25.00 262 292
TPR_8 Tetratricopeptide repeat 0.00034 11 25.70 332 356
AEP1 ATPase expression protein 1 0.0088 5 27.00 334 372
PPR_3 Pentatricopeptide repeat domain 0.0046 7 25.00 334 358
PPR PPR repeat 3.5E-08 23 25.00 334 360
PPR_2 PPR repeat family 7E-07 19 30.00 334 362
PPR_1 PPR repeat 7.9E-07 19 23.80 335 358
RPN7 26S proteasome subunit RPN7 0.016 5 25.30 336 363
Mtf2 Mtf2 family 0.21 1 27.00 337 367
TPR_14 Tetratricopeptide repeat 0.27 2 23.50 337 357
TPR_19 Tetratricopeptide repeat 0.65 1 25.00 338 356
PPR_long Pentacotripeptide-repeat region of PRORP 4.9E-06 16 27.00 348 449
PPR_3 Pentatricopeptide repeat domain 4.5E-09 26 25.00 361 407
PPR_1 PPR repeat 2.7E-10 30 23.80 361 389
PPR_2 PPR repeat family 2E-18 56 30.00 361 409
PPR PPR repeat 7.4E-13 38 25.00 363 393
TPR_14 Tetratricopeptide repeat 0.27 2 23.50 370 391
Mtf2 Mtf2 family 0.017 5 27.00 383 403
PPR_1 PPR repeat 0.0079 6 23.80 392 415
PPR PPR repeat 0.02 5 25.00 399 420
PPR_3 Pentatricopeptide repeat domain 0.00011 12 25.00 423 475
AEP1 ATPase expression protein 1 0.069 2 27.00 428 473
PPR_2 PPR repeat family 5.5E-06 16 30.00 431 461
PPR PPR repeat 4.5E-08 23 25.00 436 462
PPR_1 PPR repeat 0.00019 11 23.80 436 459
RPN7 26S proteasome subunit RPN7 0.0051 6 25.30 436 462
PPR_long Pentacotripeptide-repeat region of PRORP 0.088 2 27.00 445 545
PPR_2 PPR repeat family 4.3E-10 30 30.00 461 510
PPR_1 PPR repeat 0.00059 10 23.80 462 487
PPR PPR repeat 9.8E-08 22 25.00 464 492
PPR_2 PPR repeat family 0.0057 7 30.00 535 562
AEP1 ATPase expression protein 1 0.63 -1 27.00 535 568
PPR PPR repeat 0.0011 9 25.00 538 563
PPR_1 PPR repeat 0.26 1 23.80 538 559
PPR_2 PPR repeat family 1.1E-11 35 30.00 563 611
PPR_1 PPR repeat 3.2E-05 14 23.80 564 592
PPR PPR repeat 1.2E-10 31 25.00 566 596
PPR_long Pentacotripeptide-repeat region of PRORP 5.3E-06 16 27.00 584 662
PPR_3 Pentatricopeptide repeat domain 3.2E-05 14 25.00 587 645
PPR_1 PPR repeat 0.022 4 23.80 595 627
MNE1 Mitochondrial splicing apparatus component 0.22 1 22.70 601 645
PPR PPR repeat 9.5E-05 13 25.00 602 628
PPR_2 PPR repeat family 0.00034 11 30.00 606 647
PPR_1 PPR repeat 0.00028 11 23.80 632 662
PPR_2 PPR repeat family 0.099 3 30.00 634 662
PPR PPR repeat 0.023 5 25.00 639 662
PPR_3 Pentatricopeptide repeat domain 0.66 0 25.00 666 694
TPR_14 Tetratricopeptide repeat 0.31 2 23.50 683 709
TPR_8 Tetratricopeptide repeat 0.39 1 25.70 685 701
TPR_19 Tetratricopeptide repeat 0.0048 7 25.00 686 728
PPR PPR repeat 0.2 2 25.00 705 732
DYW_deaminase DYW family of nucleic acid deaminases 0 126 31.60 737 861

871

PPR_2
PPR
PPR_1
RPN7
TPR_8
TPR_14
PPR_3
PPR
PPR_2
PPR_1
MNE1
PPR_2
PPR
PPR_1
PPR_long
Mtf2
PPR_1
AEP1
PPR
PPR_2
PPR_3
TPR_14
TPR_19
PPR_1
PPR_3
PPR_1
PPR_2
PPR
TPR_8
AEP1
PPR_3
PPR
PPR_2
PPR_1
RPN7
Mtf2
TPR_14
TPR_19
PPR_long
PPR_3
PPR_1
PPR_2
PPR
TPR_14
Mtf2
PPR_1
PPR
PPR_3
AEP1
PPR_2
PPR
PPR_1
RPN7
PPR_long
PPR_2
PPR_1
PPR
PPR_2
AEP1
PPR
PPR_1
PPR_2
PPR_1
PPR
PPR_long
PPR_3
PPR_1
MNE1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
TPR_14
TPR_8
TPR_19
PPR
DYW_deaminase

References:

AEP1

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

TPR_14

TPR_19

PPR_long

PPR_3

PPR_2

PPR_1

Mtf2

MNE1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

DYW_deaminase

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.0035	8	30.00	65	104
PPR	PPR repeat	0.1	3	25.00	70	84
PPR_1	PPR repeat	0.0027	7	23.80	71	84
RPN7	26S proteasome subunit RPN7	0.14	2	25.30	134	155
TPR_8	Tetratricopeptide repeat	0.23	2	25.70	135	153
TPR_14	Tetratricopeptide repeat	0.49	2	23.50	137	154
PPR_3	Pentatricopeptide repeat domain	0.016	5	25.00	139	158
PPR	PPR repeat	0.013	6	25.00	139	156
PPR_2	PPR repeat family	0.11	3	30.00	139	156
PPR_1	PPR repeat	0.008	6	23.80	142	154
MNE1	Mitochondrial splicing apparatus component	0.0035	7	22.70	159	189
PPR_2	PPR repeat family	1.5E-10	31	30.00	162	205
PPR	PPR repeat	2.9E-07	20	25.00	163	191
PPR_1	PPR repeat	0.048	3	23.80	163	186
PPR_long	Pentacotripeptide-repeat region of PRORP	1.6E-05	14	27.00	167	300
Mtf2	Mtf2 family	0.07	3	27.00	176	210
PPR_1	PPR repeat	0.59	0	23.80	190	201
AEP1	ATPase expression protein 1	0.0017	7	27.00	232	272
PPR	PPR repeat	1.5E-05	15	25.00	234	260
PPR_2	PPR repeat family	7.8E-06	16	30.00	234	260
PPR_3	Pentatricopeptide repeat domain	0.024	5	25.00	235	273
TPR_14	Tetratricopeptide repeat	0.042	5	23.50	236	259
TPR_19	Tetratricopeptide repeat	0.13	3	25.00	236	259
PPR_1	PPR repeat	0.00046	10	23.80	242	257
PPR_3	Pentatricopeptide repeat domain	0.067	3	25.00	258	291
PPR_1	PPR repeat	1.5E-05	15	23.80	259	287
PPR_2	PPR repeat family	1E-10	32	30.00	259	307
PPR	PPR repeat	8.1E-10	28	25.00	262	292
TPR_8	Tetratricopeptide repeat	0.00034	11	25.70	332	356
AEP1	ATPase expression protein 1	0.0088	5	27.00	334	372
PPR_3	Pentatricopeptide repeat domain	0.0046	7	25.00	334	358
PPR	PPR repeat	3.5E-08	23	25.00	334	360
PPR_2	PPR repeat family	7E-07	19	30.00	334	362
PPR_1	PPR repeat	7.9E-07	19	23.80	335	358
RPN7	26S proteasome subunit RPN7	0.016	5	25.30	336	363
Mtf2	Mtf2 family	0.21	1	27.00	337	367
TPR_14	Tetratricopeptide repeat	0.27	2	23.50	337	357
TPR_19	Tetratricopeptide repeat	0.65	1	25.00	338	356
PPR_long	Pentacotripeptide-repeat region of PRORP	4.9E-06	16	27.00	348	449
PPR_3	Pentatricopeptide repeat domain	4.5E-09	26	25.00	361	407
PPR_1	PPR repeat	2.7E-10	30	23.80	361	389
PPR_2	PPR repeat family	2E-18	56	30.00	361	409
PPR	PPR repeat	7.4E-13	38	25.00	363	393
TPR_14	Tetratricopeptide repeat	0.27	2	23.50	370	391
Mtf2	Mtf2 family	0.017	5	27.00	383	403
PPR_1	PPR repeat	0.0079	6	23.80	392	415
PPR	PPR repeat	0.02	5	25.00	399	420
PPR_3	Pentatricopeptide repeat domain	0.00011	12	25.00	423	475
AEP1	ATPase expression protein 1	0.069	2	27.00	428	473
PPR_2	PPR repeat family	5.5E-06	16	30.00	431	461
PPR	PPR repeat	4.5E-08	23	25.00	436	462
PPR_1	PPR repeat	0.00019	11	23.80	436	459
RPN7	26S proteasome subunit RPN7	0.0051	6	25.30	436	462
PPR_long	Pentacotripeptide-repeat region of PRORP	0.088	2	27.00	445	545
PPR_2	PPR repeat family	4.3E-10	30	30.00	461	510
PPR_1	PPR repeat	0.00059	10	23.80	462	487
PPR	PPR repeat	9.8E-08	22	25.00	464	492
PPR_2	PPR repeat family	0.0057	7	30.00	535	562
AEP1	ATPase expression protein 1	0.63	-1	27.00	535	568
PPR	PPR repeat	0.0011	9	25.00	538	563
PPR_1	PPR repeat	0.26	1	23.80	538	559
PPR_2	PPR repeat family	1.1E-11	35	30.00	563	611
PPR_1	PPR repeat	3.2E-05	14	23.80	564	592
PPR	PPR repeat	1.2E-10	31	25.00	566	596
PPR_long	Pentacotripeptide-repeat region of PRORP	5.3E-06	16	27.00	584	662
PPR_3	Pentatricopeptide repeat domain	3.2E-05	14	25.00	587	645
PPR_1	PPR repeat	0.022	4	23.80	595	627
MNE1	Mitochondrial splicing apparatus component	0.22	1	22.70	601	645
PPR	PPR repeat	9.5E-05	13	25.00	602	628
PPR_2	PPR repeat family	0.00034	11	30.00	606	647
PPR_1	PPR repeat	0.00028	11	23.80	632	662
PPR_2	PPR repeat family	0.099	3	30.00	634	662
PPR	PPR repeat	0.023	5	25.00	639	662
PPR_3	Pentatricopeptide repeat domain	0.66	0	25.00	666	694
TPR_14	Tetratricopeptide repeat	0.31	2	23.50	683	709
TPR_8	Tetratricopeptide repeat	0.39	1	25.70	685	701
TPR_19	Tetratricopeptide repeat	0.0048	7	25.00	686	728
PPR	PPR repeat	0.2	2	25.00	705	732
DYW_deaminase	DYW family of nucleic acid deaminases	0	126	31.60	737	861