c2pfam

AT4G19210.1 :

Domain Description Evalue Bits GA Start End
RLI Possible metal-binding domain in RNase L inhibitor, RLI 2E-16 51 20.60 6 37
Fer4_6 4Fe-4S binding domain 0.14 4 25.00 9 30
Fer4_10 4Fe-4S dicluster domain 0.0013 10 25.50 10 66
Fer4_7 4Fe-4S dicluster domain 0.4 3 27.00 11 31
Fer4_4 4Fe-4S binding domain 0.3 4 24.00 13 31
Fer4_21 4Fe-4S dicluster domain 3E-06 19 35.00 20 71
Fer4_9 4Fe-4S dicluster domain 3.3E-05 16 27.00 20 70
Fer4_6 4Fe-4S binding domain 2.5E-08 25 25.00 48 70
Fer4 4Fe-4S binding domain 3.5E-11 34 27.80 49 71
Fer4_10 4Fe-4S dicluster domain 3.4E-06 19 25.50 49 69
Fer4_2 4Fe-4S binding domain 1.6E-06 20 24.50 49 66
Fer4_4 4Fe-4S binding domain 0.00038 13 24.00 53 67
Fer4_16 4Fe-4S double cluster binding domain 2.7E-05 17 30.00 55 72
Fer4_17 4Fe-4S dicluster domain 9E-05 15 22.20 55 69
Fer4_8 4Fe-4S dicluster domain 0.00023 13 27.00 55 67
Fer4_7 4Fe-4S dicluster domain 1.8E-06 20 27.00 55 73
AAA_29 P-loop containing region of AAA domain 0.00085 11 27.00 91 120
AAA_16 AAA ATPase domain 0.0031 9 32.60 98 226
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.038 6 26.60 101 137
Rad17 Rad17 cell cycle checkpoint protein 0.0002 13 19.70 101 142
ABC_tran ABC transporter 1.6E-20 66 23.10 102 244
RsgA_GTPase RsgA GTPase 0.0054 8 30.00 103 129
AAA_22 AAA domain 0.038 6 27.00 104 127
VirE Virulence-associated protein E 0.0028 9 21.50 104 126
AAA_14 AAA domain 0.064 5 27.00 104 128
AAA_30 AAA domain 0.065 4 27.00 104 125
NB-ARC NB-ARC domain 0.017 6 23.50 104 135
MukB MukB N-terminal 0.051 5 23.00 105 133
SRP54 SRP54-type protein, GTPase domain 0.013 7 20.50 105 128
AAA_24 AAA domain 0.048 5 27.00 105 123
SMC_N RecF/RecN/SMC N terminal domain 1E-07 23 40.00 105 278
NACHT NACHT domain 0.025 6 20.40 106 128
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00098 10 27.00 107 124
MMR_HSR1 GTPase of unknown function 0.11 4 24.50 107 126
AAA_7 P-loop containing dynein motor region 0.43 2 25.80 108 128
NTPase_1 NTPase 0.21 3 23.90 108 128
AAA_15 AAA ATPase domain 0.00087 10 32.10 108 123
AAA ATPase family associated with various cellular activities (AAA) 0.0017 10 20.80 108 159
AAA_23 AAA domain 0.1 5 27.00 108 124
AAA_33 AAA domain 0.012 7 27.00 108 139
AAA_28 AAA domain 0.044 6 27.00 108 125
RNA_helicase RNA helicase 0.017 7 21.50 108 130
AAA_5 AAA domain (dynein-related subfamily) 0.28 3 20.80 108 127
AAA_18 AAA domain 0.021 7 29.40 108 129
Thymidylate_kin Thymidylate kinase 0.0016 10 21.10 110 152
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.021 6 27.00 213 279
RsgA_GTPase RsgA GTPase 0.0003 12 30.00 341 396
TniB Bacterial TniB protein 0.00021 12 20.10 350 473
AAA_16 AAA ATPase domain 0.00032 13 32.60 365 402
AAA_23 AAA domain 4.2E-05 16 27.00 370 399
ABC_tran ABC transporter 2.2E-19 62 23.10 370 496
AAA_15 AAA ATPase domain 0.0001 13 32.10 371 422
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.00022 13 26.60 372 398
NB-ARC NB-ARC domain 0.067 4 23.50 372 392
MukB MukB N-terminal 0.058 5 23.00 373 403
Rad17 Rad17 cell cycle checkpoint protein 0.045 5 19.70 373 398
SMC_N RecF/RecN/SMC N terminal domain 0.029 5 40.00 373 392
AAA_22 AAA domain 0.00012 14 27.00 374 442
AAA_29 P-loop containing region of AAA domain 0.001 10 27.00 374 401
AAA_30 AAA domain 0.0032 9 27.00 374 398
AAA_14 AAA domain 0.025 6 27.00 374 427
AAA_7 P-loop containing dynein motor region 0.0029 9 25.80 374 442
SRP54 SRP54-type protein, GTPase domain 0.00024 12 20.50 375 399
VirE Virulence-associated protein E 0.0034 8 21.50 375 396
AAA_24 AAA domain 0.00067 11 27.00 375 394
NACHT NACHT domain 6.5E-05 14 20.40 376 444
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00013 13 27.00 376 401
AAA_33 AAA domain 0.0024 10 27.00 377 395
AAA_5 AAA domain (dynein-related subfamily) 0.0028 9 20.80 377 398
AAA_18 AAA domain 0.11 5 29.40 377 396
AAA_28 AAA domain 0.0062 8 27.00 377 395
RNA_helicase RNA helicase 0.01 8 21.50 377 396
MMR_HSR1 GTPase of unknown function 0.015 7 24.50 377 495
NTPase_1 NTPase 0.054 5 23.90 378 400
AAA ATPase family associated with various cellular activities (AAA) 0.0011 11 20.80 378 399
Thymidylate_kin Thymidylate kinase 0.041 5 21.10 381 401
SMC_N RecF/RecN/SMC N terminal domain 1.4E-05 16 40.00 460 512
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.088 4 27.00 477 500
AAA_15 AAA ATPase domain 0.84 1 32.10 484 514
Fer4_6 4Fe-4S binding domain 1 1 25.00 548 554
Fer4_10 4Fe-4S dicluster domain 0.65 2 25.50 548 557

605

RLI
Fer4_6
Fer4_10
Fer4_7
Fer4_4
Fer4_21
Fer4_9
Fer4_6
Fer4
Fer4_10
Fer4_2
Fer4_4
Fer4_16
Fer4_17
Fer4_8
Fer4_7
AAA_29
AAA_16
TsaE
Rad17
ABC_tran
RsgA_GTPase
AAA_22
VirE
AAA_14
AAA_30
NB-ARC
MukB
SRP54
AAA_24
SMC_N
NACHT
AAA_21
MMR_HSR1
AAA_7
NTPase_1
AAA_15
AAA
AAA_23
AAA_33
AAA_28
RNA_helicase
AAA_5
AAA_18
Thymidylate_kin
AAA_21
RsgA_GTPase
TniB
AAA_16
AAA_23
ABC_tran
AAA_15
TsaE
NB-ARC
MukB
Rad17
SMC_N
AAA_22
AAA_29
AAA_30
AAA_14
AAA_7
SRP54
VirE
AAA_24
NACHT
AAA_21
AAA_33
AAA_5
AAA_18
AAA_28
RNA_helicase
MMR_HSR1
NTPase_1
AAA
Thymidylate_kin
SMC_N
AAA_21
AAA_15
Fer4_6
Fer4_10

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

Thymidylate_kin

RsgA_GTPase

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

TsaE

AAA_18

MukB
10545328 Crystal structure of the N-terminal domain of MukB: a protein involved in chromosome partitioning. Structure Fold Des 1999;7:1181-1187.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

SRP54
9002525 Crystal structure of the NG domain from the signal-recognition particle receptor FtsY. Nature 1997;385:365-368.

VirE

NTPase_1

Fer4

AAA_7

AAA_16

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_33

AAA_30

AAA_29

AAA_28

RLI
9524254 cDNA cloning and expression analysis of the murine ribonuclease L inhibitor. Gene 1998;209:149-156.
7539425 Cloning and characterization of a RNAse L inhibitor. A new component of the interferon-regulated 2-5A pathway. J Biol Chem 1995;270:13308-13317.

AAA_15

AAA_24

AAA_23

AAA_22

AAA_21

Fer4_9

Fer4_8

Fer4_7

Fer4_6

AAA_14

Fer4_4

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

Fer4_21

Fer4_2

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

Fer4_17

Fer4_16

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

Fer4_10

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

Domain	Description	Evalue	Bits	GA	Start	End
RLI	Possible metal-binding domain in RNase L inhibitor, RLI	2E-16	51	20.60	6	37
Fer4_6	4Fe-4S binding domain	0.14	4	25.00	9	30
Fer4_10	4Fe-4S dicluster domain	0.0013	10	25.50	10	66
Fer4_7	4Fe-4S dicluster domain	0.4	3	27.00	11	31
Fer4_4	4Fe-4S binding domain	0.3	4	24.00	13	31
Fer4_21	4Fe-4S dicluster domain	3E-06	19	35.00	20	71
Fer4_9	4Fe-4S dicluster domain	3.3E-05	16	27.00	20	70
Fer4_6	4Fe-4S binding domain	2.5E-08	25	25.00	48	70
Fer4	4Fe-4S binding domain	3.5E-11	34	27.80	49	71
Fer4_10	4Fe-4S dicluster domain	3.4E-06	19	25.50	49	69
Fer4_2	4Fe-4S binding domain	1.6E-06	20	24.50	49	66
Fer4_4	4Fe-4S binding domain	0.00038	13	24.00	53	67
Fer4_16	4Fe-4S double cluster binding domain	2.7E-05	17	30.00	55	72
Fer4_17	4Fe-4S dicluster domain	9E-05	15	22.20	55	69
Fer4_8	4Fe-4S dicluster domain	0.00023	13	27.00	55	67
Fer4_7	4Fe-4S dicluster domain	1.8E-06	20	27.00	55	73
AAA_29	P-loop containing region of AAA domain	0.00085	11	27.00	91	120
AAA_16	AAA ATPase domain	0.0031	9	32.60	98	226
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.038	6	26.60	101	137
Rad17	Rad17 cell cycle checkpoint protein	0.0002	13	19.70	101	142
ABC_tran	ABC transporter	1.6E-20	66	23.10	102	244
RsgA_GTPase	RsgA GTPase	0.0054	8	30.00	103	129
AAA_22	AAA domain	0.038	6	27.00	104	127
VirE	Virulence-associated protein E	0.0028	9	21.50	104	126
AAA_14	AAA domain	0.064	5	27.00	104	128
AAA_30	AAA domain	0.065	4	27.00	104	125
NB-ARC	NB-ARC domain	0.017	6	23.50	104	135
MukB	MukB N-terminal	0.051	5	23.00	105	133
SRP54	SRP54-type protein, GTPase domain	0.013	7	20.50	105	128
AAA_24	AAA domain	0.048	5	27.00	105	123
SMC_N	RecF/RecN/SMC N terminal domain	1E-07	23	40.00	105	278
NACHT	NACHT domain	0.025	6	20.40	106	128
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00098	10	27.00	107	124
MMR_HSR1	GTPase of unknown function	0.11	4	24.50	107	126
AAA_7	P-loop containing dynein motor region	0.43	2	25.80	108	128
NTPase_1	NTPase	0.21	3	23.90	108	128
AAA_15	AAA ATPase domain	0.00087	10	32.10	108	123
AAA	ATPase family associated with various cellular activities (AAA)	0.0017	10	20.80	108	159
AAA_23	AAA domain	0.1	5	27.00	108	124
AAA_33	AAA domain	0.012	7	27.00	108	139
AAA_28	AAA domain	0.044	6	27.00	108	125
RNA_helicase	RNA helicase	0.017	7	21.50	108	130
AAA_5	AAA domain (dynein-related subfamily)	0.28	3	20.80	108	127
AAA_18	AAA domain	0.021	7	29.40	108	129
Thymidylate_kin	Thymidylate kinase	0.0016	10	21.10	110	152
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.021	6	27.00	213	279
RsgA_GTPase	RsgA GTPase	0.0003	12	30.00	341	396
TniB	Bacterial TniB protein	0.00021	12	20.10	350	473
AAA_16	AAA ATPase domain	0.00032	13	32.60	365	402
AAA_23	AAA domain	4.2E-05	16	27.00	370	399
ABC_tran	ABC transporter	2.2E-19	62	23.10	370	496
AAA_15	AAA ATPase domain	0.0001	13	32.10	371	422
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.00022	13	26.60	372	398
NB-ARC	NB-ARC domain	0.067	4	23.50	372	392
MukB	MukB N-terminal	0.058	5	23.00	373	403
Rad17	Rad17 cell cycle checkpoint protein	0.045	5	19.70	373	398
SMC_N	RecF/RecN/SMC N terminal domain	0.029	5	40.00	373	392
AAA_22	AAA domain	0.00012	14	27.00	374	442
AAA_29	P-loop containing region of AAA domain	0.001	10	27.00	374	401
AAA_30	AAA domain	0.0032	9	27.00	374	398
AAA_14	AAA domain	0.025	6	27.00	374	427
AAA_7	P-loop containing dynein motor region	0.0029	9	25.80	374	442
SRP54	SRP54-type protein, GTPase domain	0.00024	12	20.50	375	399
VirE	Virulence-associated protein E	0.0034	8	21.50	375	396
AAA_24	AAA domain	0.00067	11	27.00	375	394
NACHT	NACHT domain	6.5E-05	14	20.40	376	444
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00013	13	27.00	376	401
AAA_33	AAA domain	0.0024	10	27.00	377	395
AAA_5	AAA domain (dynein-related subfamily)	0.0028	9	20.80	377	398
AAA_18	AAA domain	0.11	5	29.40	377	396
AAA_28	AAA domain	0.0062	8	27.00	377	395
RNA_helicase	RNA helicase	0.01	8	21.50	377	396
MMR_HSR1	GTPase of unknown function	0.015	7	24.50	377	495
NTPase_1	NTPase	0.054	5	23.90	378	400
AAA	ATPase family associated with various cellular activities (AAA)	0.0011	11	20.80	378	399
Thymidylate_kin	Thymidylate kinase	0.041	5	21.10	381	401
SMC_N	RecF/RecN/SMC N terminal domain	1.4E-05	16	40.00	460	512
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.088	4	27.00	477	500
AAA_15	AAA ATPase domain	0.84	1	32.10	484	514
Fer4_6	4Fe-4S binding domain	1	1	25.00	548	554
Fer4_10	4Fe-4S dicluster domain	0.65	2	25.50	548	557