c2pfam

AT4G19220.1 :

Domain Description Evalue Bits GA Start End
Herpes_UL55 Herpesvirus UL55 protein 0.00014 11 25.00 91 151
PPR_3 Pentatricopeptide repeat domain 0.85 -1 25.00 121 153
PPR PPR repeat 0.042 4 25.00 128 153
PPR_2 PPR repeat family 1.2E-08 25 30.00 151 190
PPR_3 Pentatricopeptide repeat domain 0.11 2 25.00 151 181
PPR_1 PPR repeat 0.00027 10 23.80 152 179
PPR PPR repeat 4.6E-09 26 25.00 155 183
TPR_12 Tetratricopeptide repeat 0.47 0 30.10 155 177
TPR_10 Tetratricopeptide repeat 0.15 2 27.50 162 180
PPR_2 PPR repeat family 0.00013 12 30.00 223 253
PPR_3 Pentatricopeptide repeat domain 0.012 5 25.00 225 252
PPR PPR repeat 0.0002 11 25.00 226 253
RNPP_C RNPP family C-terminal domain 0.66 -1 26.50 250 281
PPR_3 Pentatricopeptide repeat domain 0.0036 7 25.00 253 299
PPR_2 PPR repeat family 3.3E-11 33 30.00 253 300
PPR PPR repeat 4.3E-06 16 25.00 255 284
PPR_1 PPR repeat 0.022 4 23.80 284 298
PPR PPR repeat 0.027 5 25.00 290 319
RNPP_C RNPP family C-terminal domain 0.14 1 26.50 324 353
PPR_3 Pentatricopeptide repeat domain 0.095 2 25.00 330 351
PPR PPR repeat 9.7E-07 18 25.00 330 356
PPR_1 PPR repeat 0.00095 8 23.80 330 351
PPR_2 PPR repeat family 9.9E-05 12 30.00 330 356
TPR_10 Tetratricopeptide repeat 0.47 0 27.50 335 352
TPR_7 Tetratricopeptide repeat 0.0017 8 27.90 335 353
PPR_1 PPR repeat 7.7E-06 15 23.80 354 384
PPR_2 PPR repeat family 6.8E-10 29 30.00 356 396
PPR_3 Pentatricopeptide repeat domain 0.00023 11 25.00 356 405
PPR PPR repeat 2.2E-07 21 25.00 359 385
ATP13 Mitochondrial ATPase expression 0.03 4 26.70 362 386
ATP13 Mitochondrial ATPase expression 0.0049 6 26.70 416 471
PPR_2 PPR repeat family 0.087 3 30.00 432 453
PPR_1 PPR repeat 0.054 3 23.80 433 453
PPR PPR repeat 0.00041 10 25.00 433 453
RNPP_C RNPP family C-terminal domain 0.0045 6 26.50 454 492
PPR_1 PPR repeat 4.3E-06 16 23.80 458 485
PPR_2 PPR repeat family 4.5E-06 16 30.00 459 488
PPR_3 Pentatricopeptide repeat domain 0.059 3 25.00 459 486
PPR PPR repeat 8.7E-10 28 25.00 461 488
PPR_2 PPR repeat family 0.074 3 30.00 533 560
PPR_2 PPR repeat family 0.00022 11 30.00 563 594
PPR_1 PPR repeat 0.28 1 23.80 563 579
PPR PPR repeat 4.2E-07 20 25.00 566 594
TPR_12 Tetratricopeptide repeat 0.68 0 30.10 608 630
ATP13 Mitochondrial ATPase expression 0.14 2 26.70 633 658
PPR_3 Pentatricopeptide repeat domain 0.0009 9 25.00 639 676
PPR PPR repeat 0.00011 12 25.00 639 659
PPR_1 PPR repeat 0.0026 7 23.80 639 658
PPR_2 PPR repeat family 0.00076 9 30.00 639 658
PPR_1 PPR repeat 0.071 2 23.80 663 676
PPR_2 PPR repeat family 1.5E-08 24 30.00 664 707
PPR PPR repeat 4.2E-05 13 25.00 668 693
PPR_3 Pentatricopeptide repeat domain 0.066 3 25.00 683 707
PPR PPR repeat 0.0085 6 25.00 738 757
PPR_1 PPR repeat 0.86 -1 23.80 739 757
PPR_2 PPR repeat family 6E-10 29 30.00 764 811
PPR PPR repeat 8.6E-09 25 25.00 766 792
PPR_1 PPR repeat 0.014 5 23.80 767 789
PPR_3 Pentatricopeptide repeat domain 0.063 3 25.00 767 810
RNPP_C RNPP family C-terminal domain 0.82 -2 26.50 767 804
ATP13 Mitochondrial ATPase expression 0.00029 10 26.70 782 841
PPR PPR repeat 1.8E-06 18 25.00 802 829
PPR_2 PPR repeat family 0.035 4 30.00 805 834
PPR_1 PPR repeat 0.0073 6 23.80 842 858
PPR PPR repeat 0.057 4 25.00 843 858
PPR PPR repeat 0.84 0 25.00 871 889
PPR_3 Pentatricopeptide repeat domain 0.24 1 25.00 873 892
TPR_12 Tetratricopeptide repeat 0.012 6 30.10 899 924
TPR_10 Tetratricopeptide repeat 0.0027 7 27.50 902 926
TPR_7 Tetratricopeptide repeat 0.0047 7 27.90 906 927
PPR PPR repeat 0.72 0 25.00 906 927

951

Herpes_UL55
PPR_3
PPR
PPR_2
PPR_3
PPR_1
PPR
TPR_12
TPR_10
PPR_2
PPR_3
PPR
RNPP_C
PPR_3
PPR_2
PPR
PPR_1
PPR
RNPP_C
PPR_3
PPR
PPR_1
PPR_2
TPR_10
TPR_7
PPR_1
PPR_2
PPR_3
PPR
ATP13
ATP13
PPR_2
PPR_1
PPR
RNPP_C
PPR_1
PPR_2
PPR_3
PPR
PPR_2
PPR_2
PPR_1
PPR
TPR_12
ATP13
PPR_3
PPR
PPR_1
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_3
RNPP_C
ATP13
PPR
PPR_2
PPR_1
PPR
PPR
PPR_3
TPR_12
TPR_10
TPR_7
PPR

References:

RNPP_C

Herpes_UL55
9714248 Characterization of the UL55 gene product of herpes simplex virus type 2. J Gen Virol 1998;79:1989-1995.

TPR_7

ATP13

TPR_10

TPR_12

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
Herpes_UL55	Herpesvirus UL55 protein	0.00014	11	25.00	91	151
PPR_3	Pentatricopeptide repeat domain	0.85	-1	25.00	121	153
PPR	PPR repeat	0.042	4	25.00	128	153
PPR_2	PPR repeat family	1.2E-08	25	30.00	151	190
PPR_3	Pentatricopeptide repeat domain	0.11	2	25.00	151	181
PPR_1	PPR repeat	0.00027	10	23.80	152	179
PPR	PPR repeat	4.6E-09	26	25.00	155	183
TPR_12	Tetratricopeptide repeat	0.47	0	30.10	155	177
TPR_10	Tetratricopeptide repeat	0.15	2	27.50	162	180
PPR_2	PPR repeat family	0.00013	12	30.00	223	253
PPR_3	Pentatricopeptide repeat domain	0.012	5	25.00	225	252
PPR	PPR repeat	0.0002	11	25.00	226	253
RNPP_C	RNPP family C-terminal domain	0.66	-1	26.50	250	281
PPR_3	Pentatricopeptide repeat domain	0.0036	7	25.00	253	299
PPR_2	PPR repeat family	3.3E-11	33	30.00	253	300
PPR	PPR repeat	4.3E-06	16	25.00	255	284
PPR_1	PPR repeat	0.022	4	23.80	284	298
PPR	PPR repeat	0.027	5	25.00	290	319
RNPP_C	RNPP family C-terminal domain	0.14	1	26.50	324	353
PPR_3	Pentatricopeptide repeat domain	0.095	2	25.00	330	351
PPR	PPR repeat	9.7E-07	18	25.00	330	356
PPR_1	PPR repeat	0.00095	8	23.80	330	351
PPR_2	PPR repeat family	9.9E-05	12	30.00	330	356
TPR_10	Tetratricopeptide repeat	0.47	0	27.50	335	352
TPR_7	Tetratricopeptide repeat	0.0017	8	27.90	335	353
PPR_1	PPR repeat	7.7E-06	15	23.80	354	384
PPR_2	PPR repeat family	6.8E-10	29	30.00	356	396
PPR_3	Pentatricopeptide repeat domain	0.00023	11	25.00	356	405
PPR	PPR repeat	2.2E-07	21	25.00	359	385
ATP13	Mitochondrial ATPase expression	0.03	4	26.70	362	386
ATP13	Mitochondrial ATPase expression	0.0049	6	26.70	416	471
PPR_2	PPR repeat family	0.087	3	30.00	432	453
PPR_1	PPR repeat	0.054	3	23.80	433	453
PPR	PPR repeat	0.00041	10	25.00	433	453
RNPP_C	RNPP family C-terminal domain	0.0045	6	26.50	454	492
PPR_1	PPR repeat	4.3E-06	16	23.80	458	485
PPR_2	PPR repeat family	4.5E-06	16	30.00	459	488
PPR_3	Pentatricopeptide repeat domain	0.059	3	25.00	459	486
PPR	PPR repeat	8.7E-10	28	25.00	461	488
PPR_2	PPR repeat family	0.074	3	30.00	533	560
PPR_2	PPR repeat family	0.00022	11	30.00	563	594
PPR_1	PPR repeat	0.28	1	23.80	563	579
PPR	PPR repeat	4.2E-07	20	25.00	566	594
TPR_12	Tetratricopeptide repeat	0.68	0	30.10	608	630
ATP13	Mitochondrial ATPase expression	0.14	2	26.70	633	658
PPR_3	Pentatricopeptide repeat domain	0.0009	9	25.00	639	676
PPR	PPR repeat	0.00011	12	25.00	639	659
PPR_1	PPR repeat	0.0026	7	23.80	639	658
PPR_2	PPR repeat family	0.00076	9	30.00	639	658
PPR_1	PPR repeat	0.071	2	23.80	663	676
PPR_2	PPR repeat family	1.5E-08	24	30.00	664	707
PPR	PPR repeat	4.2E-05	13	25.00	668	693
PPR_3	Pentatricopeptide repeat domain	0.066	3	25.00	683	707
PPR	PPR repeat	0.0085	6	25.00	738	757
PPR_1	PPR repeat	0.86	-1	23.80	739	757
PPR_2	PPR repeat family	6E-10	29	30.00	764	811
PPR	PPR repeat	8.6E-09	25	25.00	766	792
PPR_1	PPR repeat	0.014	5	23.80	767	789
PPR_3	Pentatricopeptide repeat domain	0.063	3	25.00	767	810
RNPP_C	RNPP family C-terminal domain	0.82	-2	26.50	767	804
ATP13	Mitochondrial ATPase expression	0.00029	10	26.70	782	841
PPR	PPR repeat	1.8E-06	18	25.00	802	829
PPR_2	PPR repeat family	0.035	4	30.00	805	834
PPR_1	PPR repeat	0.0073	6	23.80	842	858
PPR	PPR repeat	0.057	4	25.00	843	858
PPR	PPR repeat	0.84	0	25.00	871	889
PPR_3	Pentatricopeptide repeat domain	0.24	1	25.00	873	892
TPR_12	Tetratricopeptide repeat	0.012	6	30.10	899	924
TPR_10	Tetratricopeptide repeat	0.0027	7	27.50	902	926
TPR_7	Tetratricopeptide repeat	0.0047	7	27.90	906	927
PPR	PPR repeat	0.72	0	25.00	906	927