c2pfam

AT4G19530.1 :

Domain Description Evalue Bits GA Start End
AAA_14 AAA domain 0.6 0 27.00 11 52
TIR TIR domain 3.6E-38 121 21.20 15 184
TIR_2 TIR domain 1E-14 45 28.00 17 109
DUF3502 Domain of unknown function (DUF3502) 0.00022 12 47.30 105 176
NB-ARC NB-ARC domain 1.5E-14 44 23.50 222 441
AAA_16 AAA ATPase domain 4E-07 21 32.60 225 265
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 0.00025 10 23.10 228 255
AAA_30 AAA domain 0.00031 11 27.00 228 256
ABC_tran ABC transporter 0.00013 13 23.10 229 252
AAA_14 AAA domain 0.00014 12 27.00 230 333
NACHT NACHT domain 9E-06 16 20.40 231 287
AAA ATPase family associated with various cellular activities (AAA) 0.00023 12 20.80 234 271
AAA_17 AAA domain 0.00029 11 27.00 235 329
AAA_16 AAA ATPase domain 0.47 1 32.60 398 445
LRR_8 Leucine rich repeat 0.6 0 27.00 578 595
LRR_3 Leucine Rich Repeat 6.5E-08 22 20.20 643 662
LRR_8 Leucine rich repeat 0.011 6 27.00 662 698
LRR_4 Leucine Rich repeats (2 copies) 0.0032 8 27.00 665 702
LRR_8 Leucine rich repeat 0.1 3 27.00 666 703
LRR_4 Leucine Rich repeats (2 copies) 0.0016 9 27.00 713 748
LRR_8 Leucine rich repeat 0.63 0 27.00 732 735
LRR_3 Leucine Rich Repeat 0.77 0 20.20 744 751
LRR_8 Leucine rich repeat 5.8E-06 16 27.00 756 812
LRR_4 Leucine Rich repeats (2 copies) 0.011 6 27.00 757 790
LRR_4 Leucine Rich repeats (2 copies) 0.0046 8 27.00 778 820
LRR_8 Leucine rich repeat 0.45 1 27.00 815 838
LRR_4 Leucine Rich repeats (2 copies) 4.5E-05 14 27.00 827 862
LRR_8 Leucine rich repeat 5.2E-05 13 27.00 833 879
LRR_4 Leucine Rich repeats (2 copies) 0.029 5 27.00 870 906

1167

AAA_14
TIR
TIR_2
DUF3502
NB-ARC
AAA_16
MeaB
AAA_30
ABC_tran
AAA_14
NACHT
AAA
AAA_17
AAA_16
LRR_8
LRR_3
LRR_8
LRR_4
LRR_8
LRR_4
LRR_8
LRR_3
LRR_8
LRR_4
LRR_4
LRR_8
LRR_4
LRR_8
LRR_4

References:

AAA_17

AAA_16

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

DUF3502

LRR_3
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

LRR_8

MeaB

LRR_4

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_30

TIR_2

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

TIR
9013863 The cloning and characterization of human MyD88: a member of an IL-1 receptor related family. FEBS Lett 1997;402:81-84.
9237759 A human homologue of the Drosophila Toll protein signals activation of adaptive immunity [see comments] Nature 1997;388:394-397.
12186654 Toll-like receptors: a family of pattern-recognition receptors in mammals. Genome Biol 2002;3:REVIEWS3011.

Domain	Description	Evalue	Bits	GA	Start	End
AAA_14	AAA domain	0.6	0	27.00	11	52
TIR	TIR domain	3.6E-38	121	21.20	15	184
TIR_2	TIR domain	1E-14	45	28.00	17	109
DUF3502	Domain of unknown function (DUF3502)	0.00022	12	47.30	105	176
NB-ARC	NB-ARC domain	1.5E-14	44	23.50	222	441
AAA_16	AAA ATPase domain	4E-07	21	32.60	225	265
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	0.00025	10	23.10	228	255
AAA_30	AAA domain	0.00031	11	27.00	228	256
ABC_tran	ABC transporter	0.00013	13	23.10	229	252
AAA_14	AAA domain	0.00014	12	27.00	230	333
NACHT	NACHT domain	9E-06	16	20.40	231	287
AAA	ATPase family associated with various cellular activities (AAA)	0.00023	12	20.80	234	271
AAA_17	AAA domain	0.00029	11	27.00	235	329
AAA_16	AAA ATPase domain	0.47	1	32.60	398	445
LRR_8	Leucine rich repeat	0.6	0	27.00	578	595
LRR_3	Leucine Rich Repeat	6.5E-08	22	20.20	643	662
LRR_8	Leucine rich repeat	0.011	6	27.00	662	698
LRR_4	Leucine Rich repeats (2 copies)	0.0032	8	27.00	665	702
LRR_8	Leucine rich repeat	0.1	3	27.00	666	703
LRR_4	Leucine Rich repeats (2 copies)	0.0016	9	27.00	713	748
LRR_8	Leucine rich repeat	0.63	0	27.00	732	735
LRR_3	Leucine Rich Repeat	0.77	0	20.20	744	751
LRR_8	Leucine rich repeat	5.8E-06	16	27.00	756	812
LRR_4	Leucine Rich repeats (2 copies)	0.011	6	27.00	757	790
LRR_4	Leucine Rich repeats (2 copies)	0.0046	8	27.00	778	820
LRR_8	Leucine rich repeat	0.45	1	27.00	815	838
LRR_4	Leucine Rich repeats (2 copies)	4.5E-05	14	27.00	827	862
LRR_8	Leucine rich repeat	5.2E-05	13	27.00	833	879
LRR_4	Leucine Rich repeats (2 copies)	0.029	5	27.00	870	906