c2pfam

AT4G19670.1 :

Domain Description Evalue Bits GA Start End
RVT_3 Reverse transcriptase-like 1.1E-12 36 21.60 75 161
IBR IBR domain 0.0035 6 23.60 205 236
zf-RING_2 Ring finger domain 2.8E-06 16 27.30 206 251
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 3.8E-08 21 21.00 207 251
IBR IBR domain 0.053 2 23.60 247 261
zf-RING_2 Ring finger domain 0.56 -1 27.30 249 265
IBR IBR domain 6E-12 34 23.60 274 348
IBR IBR domain 6.8E-11 31 23.60 369 417
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 0.00037 9 21.00 378 419
zf-RING_2 Ring finger domain 0.041 3 27.30 389 417

532

RVT_3
IBR
zf-RING_2
zf-C3HC4
IBR
zf-RING_2
IBR
IBR
zf-C3HC4
zf-RING_2

References:

IBR
10366851 A novel transactivation domain in parkin. Trends Biochem Sci 1999;24:229-231.
10422847 TRIADs: a new class of proteins with a novel cysteine-rich signature. Protein Sci 1999;8:1557-1561.
15152079 Parkin and relatives: the RBR family of ubiquitin ligases. Physiol Genomics 2004;17:253-263.
12446796 Comparative genomics of the RBR family, including the Parkinson's disease-related gene parkin and the genes of the ariadne subfamily. Mol Biol Evol 2002;19:2039-2050.

RVT_3

zf-RING_2

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

Domain	Description	Evalue	Bits	GA	Start	End
RVT_3	Reverse transcriptase-like	1.1E-12	36	21.60	75	161
IBR	IBR domain	0.0035	6	23.60	205	236
zf-RING_2	Ring finger domain	2.8E-06	16	27.30	206	251
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	3.8E-08	21	21.00	207	251
IBR	IBR domain	0.053	2	23.60	247	261
zf-RING_2	Ring finger domain	0.56	-1	27.30	249	265
IBR	IBR domain	6E-12	34	23.60	274	348
IBR	IBR domain	6.8E-11	31	23.60	369	417
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	0.00037	9	21.00	378	419
zf-RING_2	Ring finger domain	0.041	3	27.30	389	417