c2pfam

AT4G20090.1 :

Domain Description Evalue Bits GA Start End
AEP1 ATPase expression protein 1 0.88 -2 27.00 74 112
PPR_long Pentacotripeptide-repeat region of PRORP 0.0019 7 27.00 76 159
PPR_1 PPR repeat 0.11 2 23.80 79 101
PPR PPR repeat 2.3E-05 15 25.00 79 104
PPR_2 PPR repeat family 0.22 2 30.00 81 101
TPR_19 Tetratricopeptide repeat 0.11 3 25.00 83 108
PPR PPR repeat 5.5E-06 16 25.00 115 140
PPR_2 PPR repeat family 2.9E-05 14 30.00 117 156
PPR_1 PPR repeat 0.046 3 23.80 124 139
PPR_3 Pentatricopeptide repeat domain 0.028 4 25.00 129 160
PPR_long Pentacotripeptide-repeat region of PRORP 2.9E-07 20 27.00 130 276
PPR_2 PPR repeat family 0.0046 7 30.00 147 182
PPR PPR repeat 0.17 2 25.00 150 173
PPR_3 Pentatricopeptide repeat domain 1.5E-05 15 25.00 180 230
PPR_1 PPR repeat 3E-08 23 23.80 182 213
PPR_2 PPR repeat family 3.7E-15 46 30.00 186 234
PPR PPR repeat 6.7E-08 22 25.00 189 218
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.0016 7 25.90 194 248
PPR_3 Pentatricopeptide repeat domain 7.2E-08 22 25.00 211 265
PPR_1 PPR repeat 6.7E-14 41 23.80 217 249
PPR PPR repeat 5.2E-11 32 25.00 223 253
PPR_2 PPR repeat family 4.6E-10 30 30.00 227 257
PPR_long Pentacotripeptide-repeat region of PRORP 6.2E-09 25 27.00 235 333
DUF3368 Domain of unknown function (DUF3368) 0.54 0 27.30 235 253
PPR_1 PPR repeat 5.1E-11 32 23.80 252 283
PPR_2 PPR repeat family 6.7E-18 55 30.00 255 303
PPR PPR repeat 5E-08 23 25.00 258 288
PPR_3 Pentatricopeptide repeat domain 1.1E-11 35 25.00 278 337
PPR_1 PPR repeat 3.8E-19 58 23.80 286 319
Ribosomal_L20 Ribosomal protein L20 0.96 -1 24.10 289 305
PPR_2 PPR repeat family 2.5E-19 59 30.00 290 339
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.0047 6 25.90 291 321
AEP1 ATPase expression protein 1 0.013 4 27.00 291 335
AAA_32 AAA domain 0.46 -1 26.60 293 330
PPR PPR repeat 4.6E-12 36 25.00 293 323
PIN PIN domain 0.29 2 23.60 299 348
TPR_19 Tetratricopeptide repeat 0.059 4 25.00 306 352
Ribosomal_L20 Ribosomal protein L20 0.23 2 24.10 315 341
PPR_1 PPR repeat 2E-09 27 23.80 323 354
PPR_2 PPR repeat family 1.1E-12 38 30.00 325 372
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.018 4 25.90 327 389
PPR PPR repeat 3.7E-08 23 25.00 328 357
AAA_32 AAA domain 0.00028 10 26.60 335 400
DUF3368 Domain of unknown function (DUF3368) 0.038 4 27.30 339 369
PPR_long Pentacotripeptide-repeat region of PRORP 1.3E-11 34 27.00 339 466
PPR_3 Pentatricopeptide repeat domain 2.2E-11 34 25.00 348 404
PPR_1 PPR repeat 4.1E-09 26 23.80 356 388
PPR_2 PPR repeat family 1.4E-17 54 30.00 361 409
PPR PPR repeat 1.5E-10 31 25.00 364 393
PIN PIN domain 0.0068 7 23.60 366 404
TPR_19 Tetratricopeptide repeat 0.0053 7 25.00 372 423
Ribosomal_L20 Ribosomal protein L20 0.88 0 24.10 377 409
PPR_1 PPR repeat 1.5E-14 43 23.80 391 423
PPR_2 PPR repeat family 3.2E-17 52 30.00 395 444
PPR PPR repeat 1.5E-10 31 25.00 398 428
AEP1 ATPase expression protein 1 0.044 3 27.00 399 432
PIN PIN domain 0.4 1 23.60 401 430
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.00093 8 25.90 403 458
PPR_3 Pentatricopeptide repeat domain 2.8E-06 17 25.00 406 441
DUF3368 Domain of unknown function (DUF3368) 0.002 8 27.30 409 428
Ribosomal_L20 Ribosomal protein L20 0.087 3 24.10 409 445
PPR_3 Pentatricopeptide repeat domain 1.4E-08 25 25.00 419 475
PPR_1 PPR repeat 4.2E-11 32 23.80 427 458
PPR PPR repeat 6.2E-10 29 25.00 433 463
PPR_2 PPR repeat family 1.1E-13 41 30.00 437 478
PPR_long Pentacotripeptide-repeat region of PRORP 4.4E-08 22 27.00 450 583
PPR_3 Pentatricopeptide repeat domain 1.1E-06 19 25.00 454 510
PPR_1 PPR repeat 2.4E-11 33 23.80 462 493
PPR PPR repeat 3.5E-08 23 25.00 469 498
PPR_2 PPR repeat family 2.7E-11 34 30.00 475 513
DNA_pol3_delta2 DNA polymerase III, delta subunit 0.00027 11 27.00 492 539
PPR_1 PPR repeat 3.8E-11 33 23.80 497 528
PPR_2 PPR repeat family 3.8E-09 27 30.00 500 529
PPR PPR repeat 2.5E-07 21 25.00 503 529
TPR_19 Tetratricopeptide repeat 0.052 4 25.00 516 566
PPR_3 Pentatricopeptide repeat domain 4E-09 26 25.00 537 585
PPR_1 PPR repeat 3.7E-12 36 23.80 537 566
PPR_2 PPR repeat family 6.5E-18 55 30.00 538 585
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.11 1 25.90 538 567
AEP1 ATPase expression protein 1 0.0024 7 27.00 541 603
PPR PPR repeat 2.2E-09 27 25.00 541 571
PPR_1 PPR repeat 0.0043 7 23.80 569 584
PPR_2 PPR repeat family 0.22 2 30.00 606 643

660

AEP1
PPR_long
PPR_1
PPR
PPR_2
TPR_19
PPR
PPR_2
PPR_1
PPR_3
PPR_long
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
MRP-S27
PPR_3
PPR_1
PPR
PPR_2
PPR_long
DUF3368
PPR_1
PPR_2
PPR
PPR_3
PPR_1
Ribosomal_L20
PPR_2
MRP-S27
AEP1
AAA_32
PPR
PIN
TPR_19
Ribosomal_L20
PPR_1
PPR_2
MRP-S27
PPR
AAA_32
DUF3368
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PIN
TPR_19
Ribosomal_L20
PPR_1
PPR_2
PPR
AEP1
PIN
MRP-S27
PPR_3
DUF3368
Ribosomal_L20
PPR_3
PPR_1
PPR
PPR_2
PPR_long
PPR_3
PPR_1
PPR
PPR_2
DNA_pol3_delta2
PPR_1
PPR_2
PPR
TPR_19
PPR_3
PPR_1
PPR_2
MRP-S27
AEP1
PPR
PPR_1
PPR_2

References:

AEP1

PIN
10413400 Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. Genome Res 1999;9:608-628.
11137022 PIN domains in nonsense-mediated mRNA decay and RNAi. Curr Biol 2000;10:888-890.
15864262 Prokaryotic toxin-antitoxin stress response loci. Nat Rev Microbiol. 2005;3:371-382.
15993073 The PIN-domain toxin-antitoxin array in mycobacteria. Trends Microbiol. 2005;13:360-365.

TPR_19

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

AAA_32

Ribosomal_L20

DNA_pol3_delta2

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

DUF3368

Domain	Description	Evalue	Bits	GA	Start	End
AEP1	ATPase expression protein 1	0.88	-2	27.00	74	112
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0019	7	27.00	76	159
PPR_1	PPR repeat	0.11	2	23.80	79	101
PPR	PPR repeat	2.3E-05	15	25.00	79	104
PPR_2	PPR repeat family	0.22	2	30.00	81	101
TPR_19	Tetratricopeptide repeat	0.11	3	25.00	83	108
PPR	PPR repeat	5.5E-06	16	25.00	115	140
PPR_2	PPR repeat family	2.9E-05	14	30.00	117	156
PPR_1	PPR repeat	0.046	3	23.80	124	139
PPR_3	Pentatricopeptide repeat domain	0.028	4	25.00	129	160
PPR_long	Pentacotripeptide-repeat region of PRORP	2.9E-07	20	27.00	130	276
PPR_2	PPR repeat family	0.0046	7	30.00	147	182
PPR	PPR repeat	0.17	2	25.00	150	173
PPR_3	Pentatricopeptide repeat domain	1.5E-05	15	25.00	180	230
PPR_1	PPR repeat	3E-08	23	23.80	182	213
PPR_2	PPR repeat family	3.7E-15	46	30.00	186	234
PPR	PPR repeat	6.7E-08	22	25.00	189	218
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.0016	7	25.90	194	248
PPR_3	Pentatricopeptide repeat domain	7.2E-08	22	25.00	211	265
PPR_1	PPR repeat	6.7E-14	41	23.80	217	249
PPR	PPR repeat	5.2E-11	32	25.00	223	253
PPR_2	PPR repeat family	4.6E-10	30	30.00	227	257
PPR_long	Pentacotripeptide-repeat region of PRORP	6.2E-09	25	27.00	235	333
DUF3368	Domain of unknown function (DUF3368)	0.54	0	27.30	235	253
PPR_1	PPR repeat	5.1E-11	32	23.80	252	283
PPR_2	PPR repeat family	6.7E-18	55	30.00	255	303
PPR	PPR repeat	5E-08	23	25.00	258	288
PPR_3	Pentatricopeptide repeat domain	1.1E-11	35	25.00	278	337
PPR_1	PPR repeat	3.8E-19	58	23.80	286	319
Ribosomal_L20	Ribosomal protein L20	0.96	-1	24.10	289	305
PPR_2	PPR repeat family	2.5E-19	59	30.00	290	339
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.0047	6	25.90	291	321
AEP1	ATPase expression protein 1	0.013	4	27.00	291	335
AAA_32	AAA domain	0.46	-1	26.60	293	330
PPR	PPR repeat	4.6E-12	36	25.00	293	323
PIN	PIN domain	0.29	2	23.60	299	348
TPR_19	Tetratricopeptide repeat	0.059	4	25.00	306	352
Ribosomal_L20	Ribosomal protein L20	0.23	2	24.10	315	341
PPR_1	PPR repeat	2E-09	27	23.80	323	354
PPR_2	PPR repeat family	1.1E-12	38	30.00	325	372
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.018	4	25.90	327	389
PPR	PPR repeat	3.7E-08	23	25.00	328	357
AAA_32	AAA domain	0.00028	10	26.60	335	400
DUF3368	Domain of unknown function (DUF3368)	0.038	4	27.30	339	369
PPR_long	Pentacotripeptide-repeat region of PRORP	1.3E-11	34	27.00	339	466
PPR_3	Pentatricopeptide repeat domain	2.2E-11	34	25.00	348	404
PPR_1	PPR repeat	4.1E-09	26	23.80	356	388
PPR_2	PPR repeat family	1.4E-17	54	30.00	361	409
PPR	PPR repeat	1.5E-10	31	25.00	364	393
PIN	PIN domain	0.0068	7	23.60	366	404
TPR_19	Tetratricopeptide repeat	0.0053	7	25.00	372	423
Ribosomal_L20	Ribosomal protein L20	0.88	0	24.10	377	409
PPR_1	PPR repeat	1.5E-14	43	23.80	391	423
PPR_2	PPR repeat family	3.2E-17	52	30.00	395	444
PPR	PPR repeat	1.5E-10	31	25.00	398	428
AEP1	ATPase expression protein 1	0.044	3	27.00	399	432
PIN	PIN domain	0.4	1	23.60	401	430
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.00093	8	25.90	403	458
PPR_3	Pentatricopeptide repeat domain	2.8E-06	17	25.00	406	441
DUF3368	Domain of unknown function (DUF3368)	0.002	8	27.30	409	428
Ribosomal_L20	Ribosomal protein L20	0.087	3	24.10	409	445
PPR_3	Pentatricopeptide repeat domain	1.4E-08	25	25.00	419	475
PPR_1	PPR repeat	4.2E-11	32	23.80	427	458
PPR	PPR repeat	6.2E-10	29	25.00	433	463
PPR_2	PPR repeat family	1.1E-13	41	30.00	437	478
PPR_long	Pentacotripeptide-repeat region of PRORP	4.4E-08	22	27.00	450	583
PPR_3	Pentatricopeptide repeat domain	1.1E-06	19	25.00	454	510
PPR_1	PPR repeat	2.4E-11	33	23.80	462	493
PPR	PPR repeat	3.5E-08	23	25.00	469	498
PPR_2	PPR repeat family	2.7E-11	34	30.00	475	513
DNA_pol3_delta2	DNA polymerase III, delta subunit	0.00027	11	27.00	492	539
PPR_1	PPR repeat	3.8E-11	33	23.80	497	528
PPR_2	PPR repeat family	3.8E-09	27	30.00	500	529
PPR	PPR repeat	2.5E-07	21	25.00	503	529
TPR_19	Tetratricopeptide repeat	0.052	4	25.00	516	566
PPR_3	Pentatricopeptide repeat domain	4E-09	26	25.00	537	585
PPR_1	PPR repeat	3.7E-12	36	23.80	537	566
PPR_2	PPR repeat family	6.5E-18	55	30.00	538	585
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.11	1	25.90	538	567
AEP1	ATPase expression protein 1	0.0024	7	27.00	541	603
PPR	PPR repeat	2.2E-09	27	25.00	541	571
PPR_1	PPR repeat	0.0043	7	23.80	569	584
PPR_2	PPR repeat family	0.22	2	30.00	606	643