c2pfam

AT4G20380.1 :

Domain Description Evalue Bits GA Start End
Ribosomal_S27e Ribosomal protein S27 0.025 4 21.10 3 19
zinc_ribbon_6 Zinc-ribbon 0.35 0 27.00 5 32
zinc_ribbon_12 Probable zinc-ribbon domain 0.0035 7 21.10 6 20
zf-LSD1 LSD1 zinc finger 2.5E-17 52 20.20 7 31
RNA_POL_M_15KD RNA polymerases M/15 Kd subunit 0.00018 11 25.20 7 29
zinc_ribbon_4 zinc-ribbon domain 0.0065 6 30.30 17 31
zf-Sec23_Sec24 Sec23/Sec24 zinc finger 0.00065 9 20.40 19 36
Tmemb_55A Transmembrane protein 55A 6.3E-08 21 30.00 21 123
DUF2197 Uncharacterized protein conserved in bacteria (DUF2197) 0.0069 6 22.20 22 34
YABBY YABBY protein 0.00068 10 21.00 22 56
zinc_ribbon_12 Probable zinc-ribbon domain 0.0019 8 21.10 23 57
Ribosomal_S27e Ribosomal protein S27 0.023 4 21.10 23 60
zinc_ribbon_6 Zinc-ribbon 0.02 4 27.00 30 71
Ribosomal_S27e Ribosomal protein S27 0.089 2 21.10 46 72
zf-Sec23_Sec24 Sec23/Sec24 zinc finger 0.0031 7 20.40 48 78
RNA_POL_M_15KD RNA polymerases M/15 Kd subunit 0.011 5 25.20 48 70
zf-LSD1 LSD1 zinc finger 4.7E-15 45 20.20 48 71
zinc_ribbon_6 Zinc-ribbon 0.052 3 27.00 58 79
zinc_ribbon_4 zinc-ribbon domain 0.0033 7 30.30 60 72
YABBY YABBY protein 0.0045 7 21.00 63 102
DUF2197 Uncharacterized protein conserved in bacteria (DUF2197) 0.17 2 22.20 63 79
zinc_ribbon_12 Probable zinc-ribbon domain 0.0014 8 21.10 64 103
zinc_ribbon_6 Zinc-ribbon 4.3E-05 13 27.00 80 117
YABBY YABBY protein 0.00048 10 21.00 86 131
zinc_ribbon_4 zinc-ribbon domain 0.044 3 30.30 92 101
zf-LSD1 LSD1 zinc finger 2.5E-17 52 20.20 95 119
RNA_POL_M_15KD RNA polymerases M/15 Kd subunit 0.0052 6 25.20 102 118
zf-Sec23_Sec24 Sec23/Sec24 zinc finger 0.1 2 20.40 106 122
zinc_ribbon_4 zinc-ribbon domain 0.0072 6 30.30 108 118
DUF2197 Uncharacterized protein conserved in bacteria (DUF2197) 0.038 4 22.20 110 123

184

Ribosomal_S27e
zinc_ribbon_6
zinc_ribbon_12
zf-LSD1
RNA_POL_M_15KD
zinc_ribbon_4
zf-Sec23_Sec24
Tmemb_55A
DUF2197
YABBY
zinc_ribbon_12
Ribosomal_S27e
zinc_ribbon_6
Ribosomal_S27e
zf-Sec23_Sec24
RNA_POL_M_15KD
zf-LSD1
zinc_ribbon_6
zinc_ribbon_4
YABBY
DUF2197
zinc_ribbon_12
zinc_ribbon_6
YABBY
zinc_ribbon_4
zf-LSD1
RNA_POL_M_15KD
zf-Sec23_Sec24
zinc_ribbon_4
DUF2197

References:

YABBY
10679447 The YABBY gene family and abaxial cell fate. Curr Opin Plant Biol 2000;3:17-22.
11858837 Establishment of polarity in angiosperm lateral organs. Trends Genet 2002;18:134-141.

zinc_ribbon_6

zinc_ribbon_12

Tmemb_55A
16365287 The identification and characterization of two phosphatidylinositol-4,5-bisphosphate 4-phosphatases. Proc Natl Acad Sci U S A. 2005;102:18854-18859.

Ribosomal_S27e
8441676 Zinc finger-like motifs in rat ribosomal proteins S27 and S29. Nucleic Acids Res 1993;21:649-655.

zf-Sec23_Sec24
11535824 Structure of the Sec23p/24p and Sec13p/31p complexes of COPII. Proc Natl Acad Sci USA 2001;98:10704-10709.

zf-LSD1
9054508 A novel zinc finger protein is encoded by the Arabidopsis LSD1 gene and functions as a negative regulator of plant cell death. Cell 1997;88:685-694.
12732715 Antagonistic control of oxidative stress-induced cell death in Arabidopsis by two related, plant-specific zinc finger proteins. Proc Natl Acad Sci U S A 2003;100:6831-6836.

DUF2197

RNA_POL_M_15KD

zinc_ribbon_4

Domain	Description	Evalue	Bits	GA	Start	End
Ribosomal_S27e	Ribosomal protein S27	0.025	4	21.10	3	19
zinc_ribbon_6	Zinc-ribbon	0.35	0	27.00	5	32
zinc_ribbon_12	Probable zinc-ribbon domain	0.0035	7	21.10	6	20
zf-LSD1	LSD1 zinc finger	2.5E-17	52	20.20	7	31
RNA_POL_M_15KD	RNA polymerases M/15 Kd subunit	0.00018	11	25.20	7	29
zinc_ribbon_4	zinc-ribbon domain	0.0065	6	30.30	17	31
zf-Sec23_Sec24	Sec23/Sec24 zinc finger	0.00065	9	20.40	19	36
Tmemb_55A	Transmembrane protein 55A	6.3E-08	21	30.00	21	123
DUF2197	Uncharacterized protein conserved in bacteria (DUF2197)	0.0069	6	22.20	22	34
YABBY	YABBY protein	0.00068	10	21.00	22	56
zinc_ribbon_12	Probable zinc-ribbon domain	0.0019	8	21.10	23	57
Ribosomal_S27e	Ribosomal protein S27	0.023	4	21.10	23	60
zinc_ribbon_6	Zinc-ribbon	0.02	4	27.00	30	71
Ribosomal_S27e	Ribosomal protein S27	0.089	2	21.10	46	72
zf-Sec23_Sec24	Sec23/Sec24 zinc finger	0.0031	7	20.40	48	78
RNA_POL_M_15KD	RNA polymerases M/15 Kd subunit	0.011	5	25.20	48	70
zf-LSD1	LSD1 zinc finger	4.7E-15	45	20.20	48	71
zinc_ribbon_6	Zinc-ribbon	0.052	3	27.00	58	79
zinc_ribbon_4	zinc-ribbon domain	0.0033	7	30.30	60	72
YABBY	YABBY protein	0.0045	7	21.00	63	102
DUF2197	Uncharacterized protein conserved in bacteria (DUF2197)	0.17	2	22.20	63	79
zinc_ribbon_12	Probable zinc-ribbon domain	0.0014	8	21.10	64	103
zinc_ribbon_6	Zinc-ribbon	4.3E-05	13	27.00	80	117
YABBY	YABBY protein	0.00048	10	21.00	86	131
zinc_ribbon_4	zinc-ribbon domain	0.044	3	30.30	92	101
zf-LSD1	LSD1 zinc finger	2.5E-17	52	20.20	95	119
RNA_POL_M_15KD	RNA polymerases M/15 Kd subunit	0.0052	6	25.20	102	118
zf-Sec23_Sec24	Sec23/Sec24 zinc finger	0.1	2	20.40	106	122
zinc_ribbon_4	zinc-ribbon domain	0.0072	6	30.30	108	118
DUF2197	Uncharacterized protein conserved in bacteria (DUF2197)	0.038	4	22.20	110	123