c2pfam

AT4G20770.1 :

Domain Description Evalue Bits GA Start End
PPR_3 Pentatricopeptide repeat domain 1.4E-05 15 25.00 33 67
TPR_19 Tetratricopeptide repeat 0.21 2 25.00 40 66
PPR_2 PPR repeat family 4E-05 13 30.00 40 70
PPR PPR repeat 4.3E-05 13 25.00 44 70
PPR_long Pentacotripeptide-repeat region of PRORP 0.02 4 27.00 50 113
PPR_1 PPR repeat 0.039 3 23.80 54 68
PPR_1 PPR repeat 9.4E-06 15 23.80 71 98
PPR_2 PPR repeat family 1.2E-06 18 30.00 71 102
PPR_3 Pentatricopeptide repeat domain 0.0031 7 25.00 71 100
PPR PPR repeat 0.00014 12 25.00 74 102
PPR_2 PPR repeat family 2.5E-11 33 30.00 101 149
PPR_1 PPR repeat 0.0043 7 23.80 101 130
PPR_3 Pentatricopeptide repeat domain 6.3E-05 13 25.00 102 149
PPR PPR repeat 2.2E-09 27 25.00 104 134
PPR_long Pentacotripeptide-repeat region of PRORP 0.026 3 27.00 120 154
PPR_long Pentacotripeptide-repeat region of PRORP 0.021 4 27.00 145 236
PPR_2 PPR repeat family 0.4 1 30.00 171 187
PPR PPR repeat 0.11 3 25.00 177 189
PPR_1 PPR repeat 5.7E-09 25 23.80 202 231
PPR_3 Pentatricopeptide repeat domain 0.0097 6 25.00 202 237
PPR_2 PPR repeat family 4.2E-11 33 30.00 203 244
PPR PPR repeat 2.7E-09 27 25.00 206 236
PPR_long Pentacotripeptide-repeat region of PRORP 5E-06 16 27.00 206 367
PPR_3 Pentatricopeptide repeat domain 0.0002 11 25.00 283 322
PPR PPR repeat 3.3E-05 14 25.00 288 313
PPR_2 PPR repeat family 0.0021 8 30.00 288 311
PPR_1 PPR repeat 0.32 1 23.80 288 310
PPR_1 PPR repeat 7E-05 12 23.80 313 342
PPR_2 PPR repeat family 7.7E-11 32 30.00 314 361
PPR PPR repeat 7.4E-07 19 25.00 316 346
PPR_long Pentacotripeptide-repeat region of PRORP 6.1E-05 12 27.00 332 427
PPR_3 Pentatricopeptide repeat domain 4.2E-05 13 25.00 339 374
PPR_1 PPR repeat 0.91 -1 23.80 345 366
PPR PPR repeat 0.012 6 25.00 351 375
PPR_1 PPR repeat 0.059 3 23.80 378 407
PPR_3 Pentatricopeptide repeat domain 0.00034 10 25.00 378 426
PPR_2 PPR repeat family 3.7E-15 46 30.00 379 428
PPR PPR repeat 1.2E-05 15 25.00 383 408
TPR_7 Tetratricopeptide repeat 0.42 1 27.90 395 406
PPR_long Pentacotripeptide-repeat region of PRORP 0.13 1 27.00 417 468
PPR PPR repeat 0.68 0 25.00 418 438
PPR PPR repeat 0.97 0 25.00 456 476
PPR_3 Pentatricopeptide repeat domain 0.25 1 25.00 480 529
PPR_1 PPR repeat 0.041 3 23.80 481 493
PPR_2 PPR repeat family 2.3E-06 17 30.00 482 530
PPR PPR repeat 9.7E-06 15 25.00 485 510
PPR PPR repeat 0.00024 11 25.00 558 583
PPR_2 PPR repeat family 0.014 5 30.00 559 580
TPR_7 Tetratricopeptide repeat 0.023 5 27.90 559 582
TPR_19 Tetratricopeptide repeat 0.021 5 25.00 560 584
PPR_1 PPR repeat 5.6E-05 13 23.80 562 578
TPR_10 Tetratricopeptide repeat 0.3 1 27.50 563 582
TPR_14 Tetratricopeptide repeat 0.38 2 23.50 564 584
PPR_2 PPR repeat family 2.5E-14 43 30.00 583 631
PPR_1 PPR repeat 4.9E-06 16 23.80 584 611
PPR PPR repeat 1.4E-10 31 25.00 586 615
TPR_14 Tetratricopeptide repeat 0.04 5 23.50 590 621
TPR_10 Tetratricopeptide repeat 0.013 5 27.50 595 613
TPR_7 Tetratricopeptide repeat 0.17 2 27.90 599 613
PPR_long Pentacotripeptide-repeat region of PRORP 6.2E-05 12 27.00 603 678
PPR_3 Pentatricopeptide repeat domain 5.9E-06 16 25.00 608 666
PPR_1 PPR repeat 0.79 -1 23.80 615 646
PPR PPR repeat 9.3E-05 12 25.00 621 648
PPR_2 PPR repeat family 0.018 5 30.00 626 654
PPR_1 PPR repeat 6.3E-06 16 23.80 651 678
PPR_2 PPR repeat family 0.26 1 30.00 659 678
PPR PPR repeat 0.0015 9 25.00 659 678
TPR_19 Tetratricopeptide repeat 0.12 3 25.00 663 683
TPR_14 Tetratricopeptide repeat 0.82 1 23.50 668 681
TPR_10 Tetratricopeptide repeat 0.19 1 27.50 668 681
TPR_16 Tetratricopeptide repeat 0.2 2 32.70 668 681
PPR PPR repeat 0.2 2 25.00 689 713
TPR_14 Tetratricopeptide repeat 0.0084 7 23.50 691 728
TPR_16 Tetratricopeptide repeat 0.00075 10 32.70 701 744
TPR_19 Tetratricopeptide repeat 0.00086 9 25.00 702 741
TPR_17 Tetratricopeptide repeat 0.00033 11 24.40 711 739
TPR_10 Tetratricopeptide repeat 0.058 3 27.50 724 745
TPR_7 Tetratricopeptide repeat 0.021 5 27.90 724 743

774

PPR_3
TPR_19
PPR_2
PPR
PPR_long
PPR_1
PPR_1
PPR_2
PPR_3
PPR
PPR_2
PPR_1
PPR_3
PPR
PPR_long
PPR_long
PPR_2
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_3
PPR
PPR_2
PPR_1
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_1
PPR_3
PPR_2
PPR
TPR_7
PPR_long
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR
PPR_2
TPR_7
TPR_19
PPR_1
TPR_10
TPR_14
PPR_2
PPR_1
PPR
TPR_14
TPR_10
TPR_7
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
TPR_19
TPR_14
TPR_10
TPR_16
PPR
TPR_14
TPR_16
TPR_19
TPR_17
TPR_10
TPR_7

References:

TPR_7

TPR_19

TPR_17

TPR_16

TPR_10

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_3	Pentatricopeptide repeat domain	1.4E-05	15	25.00	33	67
TPR_19	Tetratricopeptide repeat	0.21	2	25.00	40	66
PPR_2	PPR repeat family	4E-05	13	30.00	40	70
PPR	PPR repeat	4.3E-05	13	25.00	44	70
PPR_long	Pentacotripeptide-repeat region of PRORP	0.02	4	27.00	50	113
PPR_1	PPR repeat	0.039	3	23.80	54	68
PPR_1	PPR repeat	9.4E-06	15	23.80	71	98
PPR_2	PPR repeat family	1.2E-06	18	30.00	71	102
PPR_3	Pentatricopeptide repeat domain	0.0031	7	25.00	71	100
PPR	PPR repeat	0.00014	12	25.00	74	102
PPR_2	PPR repeat family	2.5E-11	33	30.00	101	149
PPR_1	PPR repeat	0.0043	7	23.80	101	130
PPR_3	Pentatricopeptide repeat domain	6.3E-05	13	25.00	102	149
PPR	PPR repeat	2.2E-09	27	25.00	104	134
PPR_long	Pentacotripeptide-repeat region of PRORP	0.026	3	27.00	120	154
PPR_long	Pentacotripeptide-repeat region of PRORP	0.021	4	27.00	145	236
PPR_2	PPR repeat family	0.4	1	30.00	171	187
PPR	PPR repeat	0.11	3	25.00	177	189
PPR_1	PPR repeat	5.7E-09	25	23.80	202	231
PPR_3	Pentatricopeptide repeat domain	0.0097	6	25.00	202	237
PPR_2	PPR repeat family	4.2E-11	33	30.00	203	244
PPR	PPR repeat	2.7E-09	27	25.00	206	236
PPR_long	Pentacotripeptide-repeat region of PRORP	5E-06	16	27.00	206	367
PPR_3	Pentatricopeptide repeat domain	0.0002	11	25.00	283	322
PPR	PPR repeat	3.3E-05	14	25.00	288	313
PPR_2	PPR repeat family	0.0021	8	30.00	288	311
PPR_1	PPR repeat	0.32	1	23.80	288	310
PPR_1	PPR repeat	7E-05	12	23.80	313	342
PPR_2	PPR repeat family	7.7E-11	32	30.00	314	361
PPR	PPR repeat	7.4E-07	19	25.00	316	346
PPR_long	Pentacotripeptide-repeat region of PRORP	6.1E-05	12	27.00	332	427
PPR_3	Pentatricopeptide repeat domain	4.2E-05	13	25.00	339	374
PPR_1	PPR repeat	0.91	-1	23.80	345	366
PPR	PPR repeat	0.012	6	25.00	351	375
PPR_1	PPR repeat	0.059	3	23.80	378	407
PPR_3	Pentatricopeptide repeat domain	0.00034	10	25.00	378	426
PPR_2	PPR repeat family	3.7E-15	46	30.00	379	428
PPR	PPR repeat	1.2E-05	15	25.00	383	408
TPR_7	Tetratricopeptide repeat	0.42	1	27.90	395	406
PPR_long	Pentacotripeptide-repeat region of PRORP	0.13	1	27.00	417	468
PPR	PPR repeat	0.68	0	25.00	418	438
PPR	PPR repeat	0.97	0	25.00	456	476
PPR_3	Pentatricopeptide repeat domain	0.25	1	25.00	480	529
PPR_1	PPR repeat	0.041	3	23.80	481	493
PPR_2	PPR repeat family	2.3E-06	17	30.00	482	530
PPR	PPR repeat	9.7E-06	15	25.00	485	510
PPR	PPR repeat	0.00024	11	25.00	558	583
PPR_2	PPR repeat family	0.014	5	30.00	559	580
TPR_7	Tetratricopeptide repeat	0.023	5	27.90	559	582
TPR_19	Tetratricopeptide repeat	0.021	5	25.00	560	584
PPR_1	PPR repeat	5.6E-05	13	23.80	562	578
TPR_10	Tetratricopeptide repeat	0.3	1	27.50	563	582
TPR_14	Tetratricopeptide repeat	0.38	2	23.50	564	584
PPR_2	PPR repeat family	2.5E-14	43	30.00	583	631
PPR_1	PPR repeat	4.9E-06	16	23.80	584	611
PPR	PPR repeat	1.4E-10	31	25.00	586	615
TPR_14	Tetratricopeptide repeat	0.04	5	23.50	590	621
TPR_10	Tetratricopeptide repeat	0.013	5	27.50	595	613
TPR_7	Tetratricopeptide repeat	0.17	2	27.90	599	613
PPR_long	Pentacotripeptide-repeat region of PRORP	6.2E-05	12	27.00	603	678
PPR_3	Pentatricopeptide repeat domain	5.9E-06	16	25.00	608	666
PPR_1	PPR repeat	0.79	-1	23.80	615	646
PPR	PPR repeat	9.3E-05	12	25.00	621	648
PPR_2	PPR repeat family	0.018	5	30.00	626	654
PPR_1	PPR repeat	6.3E-06	16	23.80	651	678
PPR_2	PPR repeat family	0.26	1	30.00	659	678
PPR	PPR repeat	0.0015	9	25.00	659	678
TPR_19	Tetratricopeptide repeat	0.12	3	25.00	663	683
TPR_14	Tetratricopeptide repeat	0.82	1	23.50	668	681
TPR_10	Tetratricopeptide repeat	0.19	1	27.50	668	681
TPR_16	Tetratricopeptide repeat	0.2	2	32.70	668	681
PPR	PPR repeat	0.2	2	25.00	689	713
TPR_14	Tetratricopeptide repeat	0.0084	7	23.50	691	728
TPR_16	Tetratricopeptide repeat	0.00075	10	32.70	701	744
TPR_19	Tetratricopeptide repeat	0.00086	9	25.00	702	741
TPR_17	Tetratricopeptide repeat	0.00033	11	24.40	711	739
TPR_10	Tetratricopeptide repeat	0.058	3	27.50	724	745
TPR_7	Tetratricopeptide repeat	0.021	5	27.90	724	743