c2pfam

AT4G21705.1 :

Domain Description Evalue Bits GA Start End
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.013 4 21.90 110 166
Dynactin_p62 Dynactin p62 family 4E-05 12 20.90 115 187
PPR_2 PPR repeat family 2.4E-07 21 30.00 125 165
PPR_long Pentacotripeptide-repeat region of PRORP 4.2E-07 19 27.00 127 191
TPR_8 Tetratricopeptide repeat 0.43 1 25.70 127 151
PPR_3 Pentatricopeptide repeat domain 2.1E-06 17 25.00 128 171
PPR PPR repeat 3.4E-07 20 25.00 128 157
TPR_12 Tetratricopeptide repeat 0.15 2 30.10 129 151
Pox_I3 Poxvirus I3 ssDNA-binding protein 4E-05 12 18.60 139 193
PPR_3 Pentatricopeptide repeat domain 6.2E-10 29 25.00 149 208
PPR_2 PPR repeat family 7.9E-14 41 30.00 161 206
PPR PPR repeat 5.4E-07 19 25.00 163 192
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.0099 5 21.90 178 208
Exog_C Endo/exonuclease (EXOG) C-terminal domain 0.00015 11 29.50 178 197
PPR_long Pentacotripeptide-repeat region of PRORP 0.0058 6 27.00 183 289
PPR PPR repeat 0.25 2 25.00 197 225
TPR_15 Tetratricopeptide repeat 0.013 4 26.20 203 256
PPR_3 Pentatricopeptide repeat domain 0.026 4 25.00 219 261
PPR_2 PPR repeat family 0.92 -1 30.00 220 237
TPR_12 Tetratricopeptide repeat 0.052 4 30.10 241 281
PPR PPR repeat 0.44 1 25.00 244 257
PPR_3 Pentatricopeptide repeat domain 0.0014 8 25.00 266 288
PPR_2 PPR repeat family 0.02 5 30.00 269 291
PPR PPR repeat 0.00038 10 25.00 270 291
PPR PPR repeat 0.015 6 25.00 305 332
PPR PPR repeat 0.0011 9 25.00 341 367
PPR_2 PPR repeat family 0.0044 7 30.00 341 367
TPR_15 Tetratricopeptide repeat 0.00057 9 26.20 361 412
TPR_8 Tetratricopeptide repeat 0.00062 10 25.70 373 400
TPR_12 Tetratricopeptide repeat 0.09 3 30.10 374 399
PPR PPR repeat 0.48 1 25.00 375 396
PPR_2 PPR repeat family 0.88 -1 30.00 381 395
PPR_long Pentacotripeptide-repeat region of PRORP 0.41 -1 27.00 382 395
PPR_3 Pentatricopeptide repeat domain 0.083 3 25.00 443 477
Exog_C Endo/exonuclease (EXOG) C-terminal domain 0.36 1 29.50 464 481
PPR_2 PPR repeat family 0.13 2 30.00 467 486

492

ECSIT
Dynactin_p62
PPR_2
PPR_long
TPR_8
PPR_3
PPR
TPR_12
Pox_I3
PPR_3
PPR_2
PPR
ECSIT
Exog_C
PPR_long
PPR
TPR_15
PPR_3
PPR_2
TPR_12
PPR
PPR_3
PPR_2
PPR
PPR
PPR
PPR_2
TPR_15
TPR_8
TPR_12
PPR
PPR_2
PPR_long
PPR_3
Exog_C
PPR_2

References:

TPR_15

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

Dynactin_p62
10607597 Interaction of the p62 subunit of dynactin with Arp1 and the cortical actin cytoskeleton. Curr Biol 1999;9:1497-1500.
10671518 A dynactin subunit with a highly conserved cysteine-rich motif interacts directly with Arp1. J Biol Chem 2000;275:4834-4839.

Pox_I3
9525612 Characterization of the single-stranded DNA binding protein encoded by the vaccinia virus I3 gene. J Virol 1998;72:2917-2926.

Exog_C

PPR_long

PPR_3

PPR_2

TPR_12

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.013	4	21.90	110	166
Dynactin_p62	Dynactin p62 family	4E-05	12	20.90	115	187
PPR_2	PPR repeat family	2.4E-07	21	30.00	125	165
PPR_long	Pentacotripeptide-repeat region of PRORP	4.2E-07	19	27.00	127	191
TPR_8	Tetratricopeptide repeat	0.43	1	25.70	127	151
PPR_3	Pentatricopeptide repeat domain	2.1E-06	17	25.00	128	171
PPR	PPR repeat	3.4E-07	20	25.00	128	157
TPR_12	Tetratricopeptide repeat	0.15	2	30.10	129	151
Pox_I3	Poxvirus I3 ssDNA-binding protein	4E-05	12	18.60	139	193
PPR_3	Pentatricopeptide repeat domain	6.2E-10	29	25.00	149	208
PPR_2	PPR repeat family	7.9E-14	41	30.00	161	206
PPR	PPR repeat	5.4E-07	19	25.00	163	192
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.0099	5	21.90	178	208
Exog_C	Endo/exonuclease (EXOG) C-terminal domain	0.00015	11	29.50	178	197
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0058	6	27.00	183	289
PPR	PPR repeat	0.25	2	25.00	197	225
TPR_15	Tetratricopeptide repeat	0.013	4	26.20	203	256
PPR_3	Pentatricopeptide repeat domain	0.026	4	25.00	219	261
PPR_2	PPR repeat family	0.92	-1	30.00	220	237
TPR_12	Tetratricopeptide repeat	0.052	4	30.10	241	281
PPR	PPR repeat	0.44	1	25.00	244	257
PPR_3	Pentatricopeptide repeat domain	0.0014	8	25.00	266	288
PPR_2	PPR repeat family	0.02	5	30.00	269	291
PPR	PPR repeat	0.00038	10	25.00	270	291
PPR	PPR repeat	0.015	6	25.00	305	332
PPR	PPR repeat	0.0011	9	25.00	341	367
PPR_2	PPR repeat family	0.0044	7	30.00	341	367
TPR_15	Tetratricopeptide repeat	0.00057	9	26.20	361	412
TPR_8	Tetratricopeptide repeat	0.00062	10	25.70	373	400
TPR_12	Tetratricopeptide repeat	0.09	3	30.10	374	399
PPR	PPR repeat	0.48	1	25.00	375	396
PPR_2	PPR repeat family	0.88	-1	30.00	381	395
PPR_long	Pentacotripeptide-repeat region of PRORP	0.41	-1	27.00	382	395
PPR_3	Pentatricopeptide repeat domain	0.083	3	25.00	443	477
Exog_C	Endo/exonuclease (EXOG) C-terminal domain	0.36	1	29.50	464	481
PPR_2	PPR repeat family	0.13	2	30.00	467	486