c2pfam

AT1G02890.1 :

Domain Description Evalue Bits GA Start End
SH3_12 Xrn1 SH3-like domain 0.00075 10 26.20 635 668
AAA ATPase family associated with various cellular activities (AAA) 0.033 5 20.80 681 742
AAA_24 AAA domain 0.81 0 27.00 723 743
AFG1_ATPase AFG1-like ATPase 0.00069 9 20.20 964 997
IstB_IS21 IstB-like ATP binding protein 2.2E-06 18 24.10 973 1006
AAA_7 P-loop containing dynein motor region 9.4E-05 13 25.80 975 1017
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.00041 11 26.60 976 1006
TniB Bacterial TniB protein 0.015 6 20.10 979 1000
RuvB_N Holliday junction DNA helicase ruvB N-terminus 1.5E-07 22 20.00 979 1051
AAA_16 AAA ATPase domain 3E-05 15 32.60 980 1007
TIP49 TIP49 C-terminus 1.1E-05 16 23.80 980 1018
AAA_2 AAA domain (Cdc48 subfamily) 0.00012 13 20.60 980 1049
Sigma54_activat Sigma-54 interaction domain 0.00057 10 20.20 980 1017
Guanylate_kin Guanylate kinase 0.00044 11 20.60 980 1018
AAA_28 AAA domain 0.0005 11 27.00 982 1007
AAA_25 AAA domain 0.00081 10 27.00 982 1000
AAA_33 AAA domain 5.3E-05 14 27.00 982 1009
AAA_24 AAA domain 0.00025 12 27.00 982 1002
AAA_3 ATPase family associated with various cellular activities (AAA) 0.0003 12 21.10 982 1092
RNA_helicase RNA helicase 0.00012 13 21.50 982 1082
Mg_chelatase Magnesium chelatase, subunit ChlI 1.7E-05 15 20.30 982 1000
AAA_18 AAA domain 3.5E-05 15 29.40 982 1014
AAA_14 AAA domain 7.4E-05 14 27.00 982 1050
AAA_22 AAA domain 1.2E-05 16 27.00 982 1003
AAA_5 AAA domain (dynein-related subfamily) 2.4E-06 18 20.80 982 1104
AAA ATPase family associated with various cellular activities (AAA) 0 126 20.80 982 1111
AAA_17 AAA domain 0.0015 10 27.00 985 1010
TniB Bacterial TniB protein 0.04 4 20.10 1027 1072
AAA_lid_3 AAA+ lid domain 2E-14 44 27.20 1135 1170

1246

SH3_12
AAA
AAA_24
AFG1_ATPase
IstB_IS21
AAA_7
TsaE
TniB
RuvB_N
AAA_16
TIP49
AAA_2
Sigma54_activat
Guanylate_kin
AAA_28
AAA_25
AAA_33
AAA_24
AAA_3
RNA_helicase
Mg_chelatase
AAA_18
AAA_14
AAA_22
AAA_5
AAA
AAA_17
TniB
AAA_lid_3

References:

IstB_IS21

AAA_16

AAA_14

AAA_33

TsaE

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_lid_3

AAA_17

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

AAA_7

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

SH3_12

AFG1_ATPase
1441755 AFG1, a new member of the SEC18-NSF, PAS1, CDC48-VCP, TBP family of ATPases. Yeast 1992;8:787-790.
8551518 Cloning, sequencing, and characterization of a complementary DNA from Haematobia irritans irritans (Diptera: Muscidae) that shares significant homology to a yeast ATPase. J Med Entomol 1995;32:906-910.

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_28

AAA_3
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_25

AAA_24

Guanylate_kin
1314905 Refined structure of the complex between guanylate kinase and its substrate GMP at 2.0 A resolution. J Mol Biol 1992;224:1127-1141.

AAA_22

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
SH3_12	Xrn1 SH3-like domain	0.00075	10	26.20	635	668
AAA	ATPase family associated with various cellular activities (AAA)	0.033	5	20.80	681	742
AAA_24	AAA domain	0.81	0	27.00	723	743
AFG1_ATPase	AFG1-like ATPase	0.00069	9	20.20	964	997
IstB_IS21	IstB-like ATP binding protein	2.2E-06	18	24.10	973	1006
AAA_7	P-loop containing dynein motor region	9.4E-05	13	25.80	975	1017
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.00041	11	26.60	976	1006
TniB	Bacterial TniB protein	0.015	6	20.10	979	1000
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	1.5E-07	22	20.00	979	1051
AAA_16	AAA ATPase domain	3E-05	15	32.60	980	1007
TIP49	TIP49 C-terminus	1.1E-05	16	23.80	980	1018
AAA_2	AAA domain (Cdc48 subfamily)	0.00012	13	20.60	980	1049
Sigma54_activat	Sigma-54 interaction domain	0.00057	10	20.20	980	1017
Guanylate_kin	Guanylate kinase	0.00044	11	20.60	980	1018
AAA_28	AAA domain	0.0005	11	27.00	982	1007
AAA_25	AAA domain	0.00081	10	27.00	982	1000
AAA_33	AAA domain	5.3E-05	14	27.00	982	1009
AAA_24	AAA domain	0.00025	12	27.00	982	1002
AAA_3	ATPase family associated with various cellular activities (AAA)	0.0003	12	21.10	982	1092
RNA_helicase	RNA helicase	0.00012	13	21.50	982	1082
Mg_chelatase	Magnesium chelatase, subunit ChlI	1.7E-05	15	20.30	982	1000
AAA_18	AAA domain	3.5E-05	15	29.40	982	1014
AAA_14	AAA domain	7.4E-05	14	27.00	982	1050
AAA_22	AAA domain	1.2E-05	16	27.00	982	1003
AAA_5	AAA domain (dynein-related subfamily)	2.4E-06	18	20.80	982	1104
AAA	ATPase family associated with various cellular activities (AAA)	0	126	20.80	982	1111
AAA_17	AAA domain	0.0015	10	27.00	985	1010
TniB	Bacterial TniB protein	0.04	4	20.10	1027	1072
AAA_lid_3	AAA+ lid domain	2E-14	44	27.20	1135	1170