c2pfam

AT1G20300.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 1.5E-10 32 30.00 154 196
PPR PPR repeat 0.00065 10 25.00 154 182
PPR_long Pentacotripeptide-repeat region of PRORP 0.00014 11 27.00 154 221
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.013 4 25.90 169 241
PPR_3 Pentatricopeptide repeat domain 5.8E-09 26 25.00 173 229
PPR_1 PPR repeat 5.1E-05 13 23.80 182 213
RPN7 26S proteasome subunit RPN7 0.0013 9 25.30 183 219
PPR_2 PPR repeat family 9.4E-12 35 30.00 188 232
PPR PPR repeat 1.2E-08 25 25.00 188 217
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.093 2 21.90 205 228
PPR_1 PPR repeat 3.7E-05 14 23.80 216 246
PPR_2 PPR repeat family 0.009 7 30.00 223 250
PPR PPR repeat 0.00085 10 25.00 223 249
PPR_long Pentacotripeptide-repeat region of PRORP 6.5E-15 45 27.00 243 353
PPR_3 Pentatricopeptide repeat domain 1.7E-13 41 25.00 249 299
PPR_1 PPR repeat 2.1E-13 40 23.80 251 282
PPR_2 PPR repeat family 2.2E-21 66 30.00 253 302
PPR PPR repeat 4E-10 30 25.00 257 286
BTAD Bacterial transcriptional activator domain 0.17 2 21.00 257 282
TPR_7 Tetratricopeptide repeat 0.01 6 27.90 258 280
RPN7 26S proteasome subunit RPN7 0.93 -1 25.30 260 281
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.12 1 25.90 263 316
Mtf2 Mtf2 family 0.0003 11 27.00 265 297
DUF3368 Domain of unknown function (DUF3368) 0.17 2 27.30 267 285
Exog_C Endo/exonuclease (EXOG) C-terminal domain 0.0018 9 29.50 275 291
PPR_3 Pentatricopeptide repeat domain 1.2E-12 38 25.00 285 336
PPR_1 PPR repeat 4.3E-13 39 23.80 285 316
PPR PPR repeat 1.1E-09 28 25.00 291 321
PPR_2 PPR repeat family 5.3E-12 36 30.00 295 332
RPN7 26S proteasome subunit RPN7 0.19 2 25.30 301 354
DUF3368 Domain of unknown function (DUF3368) 0.71 0 27.30 302 321
PPR_3 Pentatricopeptide repeat domain 2.4E-14 44 25.00 312 369
PPR_1 PPR repeat 1.3E-05 15 23.80 320 352
PPR_2 PPR repeat family 2.7E-18 56 30.00 323 372
PPR PPR repeat 1.7E-09 28 25.00 326 356
MRP-S27 Mitochondrial 28S ribosomal protein S27 2.8E-06 17 25.90 326 389
TPR_7 Tetratricopeptide repeat 0.034 5 27.90 327 350
BTAD Bacterial transcriptional activator domain 0.012 6 21.00 328 354
Exog_C Endo/exonuclease (EXOG) C-terminal domain 0.089 3 29.50 341 360
RabGAP-TBC Rab-GTPase-TBC domain 0.0049 7 24.50 342 390
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.12 2 21.90 344 368
PPR_3 Pentatricopeptide repeat domain 1.6E-11 34 25.00 347 405
DUF4854 Domain of unknown function (DUF4854) 0.00053 11 28.00 354 413
PPR_1 PPR repeat 4.9E-14 42 23.80 355 386
PPR_2 PPR repeat family 2.7E-16 50 30.00 358 403
PPR PPR repeat 5.2E-08 23 25.00 361 391
AEP1 ATPase expression protein 1 0.00092 8 27.00 361 421
TPR_7 Tetratricopeptide repeat 0.45 1 27.90 363 383
RPN7 26S proteasome subunit RPN7 0.66 0 25.30 366 405
PPR_3 Pentatricopeptide repeat domain 1.3E-10 32 25.00 382 442
PPR_1 PPR repeat 0.12 3 23.80 390 401
PPR_2 PPR repeat family 9.3E-13 39 30.00 397 440
PPR PPR repeat 0.019 6 25.00 397 426
RabGAP-TBC Rab-GTPase-TBC domain 0.12 2 24.50 416 452
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.001 8 21.90 417 482
DUF5321 Family of unknown function (DUF5321) 0.00012 12 27.00 418 459
PPR_1 PPR repeat 2.8E-05 14 23.80 426 438
PPR_2 PPR repeat family 3E-13 40 30.00 428 476
Mtf2 Mtf2 family 0.023 5 27.00 429 473
PPR PPR repeat 0.00015 12 25.00 431 459
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.21 1 25.90 438 512
PPR_3 Pentatricopeptide repeat domain 1.7E-09 28 25.00 452 508
RabGAP-TBC Rab-GTPase-TBC domain 0.081 3 24.50 453 512
RPN7 26S proteasome subunit RPN7 0.022 5 25.30 454 511
PPR_1 PPR repeat 6.1E-10 29 23.80 459 492
PPR_2 PPR repeat family 2.5E-08 24 30.00 463 499
PPR PPR repeat 2.2E-06 18 25.00 467 496
AEP1 ATPase expression protein 1 0.015 5 27.00 467 527
TPR_7 Tetratricopeptide repeat 0.23 2 27.90 471 491
PPR_long Pentacotripeptide-repeat region of PRORP 0.00024 11 27.00 482 532
PPR_3 Pentatricopeptide repeat domain 0.94 0 25.00 501 531
PPR_2 PPR repeat family 0.34 2 30.00 504 532
DUF3368 Domain of unknown function (DUF3368) 0.055 4 27.30 507 531
PPR PPR repeat 0.068 4 25.00 511 532
PPR_1 PPR repeat 0.32 1 23.80 513 527

537

PPR_2
PPR
PPR_long
MRP-S27
PPR_3
PPR_1
RPN7
PPR_2
PPR
ECSIT
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
BTAD
TPR_7
RPN7
MRP-S27
Mtf2
DUF3368
Exog_C
PPR_3
PPR_1
PPR
PPR_2
RPN7
DUF3368
PPR_3
PPR_1
PPR_2
PPR
MRP-S27
TPR_7
BTAD
Exog_C
RabGAP-TBC
ECSIT
PPR_3
DUF4854
PPR_1
PPR_2
PPR
AEP1
TPR_7
RPN7
PPR_3
PPR_1
PPR_2
PPR
RabGAP-TBC
ECSIT
DUF5321
PPR_1
PPR_2
Mtf2
PPR
MRP-S27
PPR_3
RabGAP-TBC
RPN7
PPR_1
PPR_2
PPR
AEP1
TPR_7
PPR_long
PPR_3
PPR_2
DUF3368
PPR
PPR_1

References:

TPR_7

DUF5321

Exog_C

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

AEP1

DUF4854

Mtf2

BTAD
12625841 New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol 2003;3:3-3.

RabGAP-TBC

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

DUF3368

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	1.5E-10	32	30.00	154	196
PPR	PPR repeat	0.00065	10	25.00	154	182
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00014	11	27.00	154	221
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.013	4	25.90	169	241
PPR_3	Pentatricopeptide repeat domain	5.8E-09	26	25.00	173	229
PPR_1	PPR repeat	5.1E-05	13	23.80	182	213
RPN7	26S proteasome subunit RPN7	0.0013	9	25.30	183	219
PPR_2	PPR repeat family	9.4E-12	35	30.00	188	232
PPR	PPR repeat	1.2E-08	25	25.00	188	217
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.093	2	21.90	205	228
PPR_1	PPR repeat	3.7E-05	14	23.80	216	246
PPR_2	PPR repeat family	0.009	7	30.00	223	250
PPR	PPR repeat	0.00085	10	25.00	223	249
PPR_long	Pentacotripeptide-repeat region of PRORP	6.5E-15	45	27.00	243	353
PPR_3	Pentatricopeptide repeat domain	1.7E-13	41	25.00	249	299
PPR_1	PPR repeat	2.1E-13	40	23.80	251	282
PPR_2	PPR repeat family	2.2E-21	66	30.00	253	302
PPR	PPR repeat	4E-10	30	25.00	257	286
BTAD	Bacterial transcriptional activator domain	0.17	2	21.00	257	282
TPR_7	Tetratricopeptide repeat	0.01	6	27.90	258	280
RPN7	26S proteasome subunit RPN7	0.93	-1	25.30	260	281
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.12	1	25.90	263	316
Mtf2	Mtf2 family	0.0003	11	27.00	265	297
DUF3368	Domain of unknown function (DUF3368)	0.17	2	27.30	267	285
Exog_C	Endo/exonuclease (EXOG) C-terminal domain	0.0018	9	29.50	275	291
PPR_3	Pentatricopeptide repeat domain	1.2E-12	38	25.00	285	336
PPR_1	PPR repeat	4.3E-13	39	23.80	285	316
PPR	PPR repeat	1.1E-09	28	25.00	291	321
PPR_2	PPR repeat family	5.3E-12	36	30.00	295	332
RPN7	26S proteasome subunit RPN7	0.19	2	25.30	301	354
DUF3368	Domain of unknown function (DUF3368)	0.71	0	27.30	302	321
PPR_3	Pentatricopeptide repeat domain	2.4E-14	44	25.00	312	369
PPR_1	PPR repeat	1.3E-05	15	23.80	320	352
PPR_2	PPR repeat family	2.7E-18	56	30.00	323	372
PPR	PPR repeat	1.7E-09	28	25.00	326	356
MRP-S27	Mitochondrial 28S ribosomal protein S27	2.8E-06	17	25.90	326	389
TPR_7	Tetratricopeptide repeat	0.034	5	27.90	327	350
BTAD	Bacterial transcriptional activator domain	0.012	6	21.00	328	354
Exog_C	Endo/exonuclease (EXOG) C-terminal domain	0.089	3	29.50	341	360
RabGAP-TBC	Rab-GTPase-TBC domain	0.0049	7	24.50	342	390
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.12	2	21.90	344	368
PPR_3	Pentatricopeptide repeat domain	1.6E-11	34	25.00	347	405
DUF4854	Domain of unknown function (DUF4854)	0.00053	11	28.00	354	413
PPR_1	PPR repeat	4.9E-14	42	23.80	355	386
PPR_2	PPR repeat family	2.7E-16	50	30.00	358	403
PPR	PPR repeat	5.2E-08	23	25.00	361	391
AEP1	ATPase expression protein 1	0.00092	8	27.00	361	421
TPR_7	Tetratricopeptide repeat	0.45	1	27.90	363	383
RPN7	26S proteasome subunit RPN7	0.66	0	25.30	366	405
PPR_3	Pentatricopeptide repeat domain	1.3E-10	32	25.00	382	442
PPR_1	PPR repeat	0.12	3	23.80	390	401
PPR_2	PPR repeat family	9.3E-13	39	30.00	397	440
PPR	PPR repeat	0.019	6	25.00	397	426
RabGAP-TBC	Rab-GTPase-TBC domain	0.12	2	24.50	416	452
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.001	8	21.90	417	482
DUF5321	Family of unknown function (DUF5321)	0.00012	12	27.00	418	459
PPR_1	PPR repeat	2.8E-05	14	23.80	426	438
PPR_2	PPR repeat family	3E-13	40	30.00	428	476
Mtf2	Mtf2 family	0.023	5	27.00	429	473
PPR	PPR repeat	0.00015	12	25.00	431	459
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.21	1	25.90	438	512
PPR_3	Pentatricopeptide repeat domain	1.7E-09	28	25.00	452	508
RabGAP-TBC	Rab-GTPase-TBC domain	0.081	3	24.50	453	512
RPN7	26S proteasome subunit RPN7	0.022	5	25.30	454	511
PPR_1	PPR repeat	6.1E-10	29	23.80	459	492
PPR_2	PPR repeat family	2.5E-08	24	30.00	463	499
PPR	PPR repeat	2.2E-06	18	25.00	467	496
AEP1	ATPase expression protein 1	0.015	5	27.00	467	527
TPR_7	Tetratricopeptide repeat	0.23	2	27.90	471	491
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00024	11	27.00	482	532
PPR_3	Pentatricopeptide repeat domain	0.94	0	25.00	501	531
PPR_2	PPR repeat family	0.34	2	30.00	504	532
DUF3368	Domain of unknown function (DUF3368)	0.055	4	27.30	507	531
PPR	PPR repeat	0.068	4	25.00	511	532
PPR_1	PPR repeat	0.32	1	23.80	513	527