c2pfam

AT4G23710.1 :

Domain Description Evalue Bits GA Start End
V-ATPase_G Vacuolar (H+)-ATPase G subunit 8.1E-34 107 22.90 2 104
V-ATPase_G_2 Vacuolar (H+)-ATPase G subunit 0.0016 9 28.00 2 81
HIP1_clath_bdg Clathrin-binding domain of Huntingtin-interacting protein 1 0.0014 9 28.80 4 60
Muted Organelle biogenesis, Muted-like protein 0.0003 11 26.00 6 59
Mod_r Modifier of rudimentary (Mod(r)) protein 3.4E-06 17 27.00 6 102
Perilipin Perilipin family 3.9E-05 13 27.50 6 93
HrpE HrpE protein 6.3E-05 13 23.00 8 88
DUF4407 Domain of unknown function (DUF4407) 0.0033 7 31.30 8 91
ATP-synt_B ATP synthase B/B' CF(0) 0.0035 8 22.40 9 95
Apolipoprotein Apolipoprotein A1/A4/E domain 1E-05 15 90.00 12 99
Peptidase_S64 Peptidase family S64 2.5E-05 13 19.80 15 96
Gcd10p Gcd10p family 0.00048 9 21.00 18 104
UPF0242 Uncharacterised protein family (UPF0242) 0.00088 9 23.70 24 87
Phlebovirus_NSM Phlebovirus nonstructural protein NS-M 7.5E-05 12 20.40 27 96
KH_1 KH domain 6.9E-05 13 20.20 62 85
HIP1_clath_bdg Clathrin-binding domain of Huntingtin-interacting protein 1 0.022 5 28.80 65 91
Muted Organelle biogenesis, Muted-like protein 0.25 2 26.00 73 85

106

V-ATPase_G
V-ATPase_G_2
HIP1_clath_bdg
Muted
Mod_r
Perilipin
HrpE
DUF4407
ATP-synt_B
Apolipoprotein
Peptidase_S64
Gcd10p
UPF0242
Phlebovirus_NSM
KH_1
HIP1_clath_bdg
Muted

References:

Peptidase_S64
15509782 Amino acid signaling in yeast: casein kinase I and the Ssy5 endoprotease are key determinants of endoproteolytic activation of the membrane-bound Stp1 transcription factor. Mol Cell Biol 2004;24:9771-9785.

ATP-synt_B

V-ATPase_G
9872382 Structure, function and regulation of the vacuolar (H+)-ATPases. FEBS Lett 1998;440:258-263.
10748245 Structure, function and regulation of the plant vacuolar H(+)-translocating ATPase. Biochim Biophys Acta 2000;1465:17-36.

Gcd10p
7542616 GCD10, a translational repressor of GCN4, is the RNA-binding subunit of eukaryotic translation initiation factor-3. Genes Dev 1995;9:1781-1796.
9851972 The essential Gcd10p-Gcd14p nuclear complex is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA. Genes Dev 1998;12:3650-3662.
10779558 The Gcd10p/Gcd14p complex is the essential two-subunit tRNA(1-methyladenosine) methyltransferase of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 2000;97:5173-5178.

DUF4407

UPF0242

V-ATPase_G_2

Perilipin

Phlebovirus_NSM

HIP1_clath_bdg

Apolipoprotein
2063194 Three-dimensional structure of the LDL receptor-binding domain of human apolipoprotein E. Science 1991;252:1817-1822.

HrpE
7579617 The complete hrp gene cluster of Pseudomonas syringae pv. syringae 61 includes two blocks of genes required for harpinPss secretion that are arranged colinearly with Yersinia ysc homologs. Mol Plant Microbe Interact 1995;8:733-746.

KH_1
8036511 Conserved structures and diversity of functions of RNA-binding proteins. Science 1994;265:615-621.
8612276 Three-dimensional structure and stability of the KH domain: molecular insights into the fragile X syndrome. Cell 1996;85:237-245.

Mod_r
7651329 Modifier of rudimentary p1, mod(r)p1, a trans-acting regulatory mutation of rudimentary. Mol Gen Genet 1995;248:69-78.
15240819 The growth-regulatory protein HCRP1/hVps37A is a subunit of mammalian ESCRT-I and mediates receptor down-regulation. Mol Biol Cell 2004;15:4337-4346.

Muted

Domain	Description	Evalue	Bits	GA	Start	End
V-ATPase_G	Vacuolar (H+)-ATPase G subunit	8.1E-34	107	22.90	2	104
V-ATPase_G_2	Vacuolar (H+)-ATPase G subunit	0.0016	9	28.00	2	81
HIP1_clath_bdg	Clathrin-binding domain of Huntingtin-interacting protein 1	0.0014	9	28.80	4	60
Muted	Organelle biogenesis, Muted-like protein	0.0003	11	26.00	6	59
Mod_r	Modifier of rudimentary (Mod(r)) protein	3.4E-06	17	27.00	6	102
Perilipin	Perilipin family	3.9E-05	13	27.50	6	93
HrpE	HrpE protein	6.3E-05	13	23.00	8	88
DUF4407	Domain of unknown function (DUF4407)	0.0033	7	31.30	8	91
ATP-synt_B	ATP synthase B/B' CF(0)	0.0035	8	22.40	9	95
Apolipoprotein	Apolipoprotein A1/A4/E domain	1E-05	15	90.00	12	99
Peptidase_S64	Peptidase family S64	2.5E-05	13	19.80	15	96
Gcd10p	Gcd10p family	0.00048	9	21.00	18	104
UPF0242	Uncharacterised protein family (UPF0242)	0.00088	9	23.70	24	87
Phlebovirus_NSM	Phlebovirus nonstructural protein NS-M	7.5E-05	12	20.40	27	96
KH_1	KH domain	6.9E-05	13	20.20	62	85
HIP1_clath_bdg	Clathrin-binding domain of Huntingtin-interacting protein 1	0.022	5	28.80	65	91
Muted	Organelle biogenesis, Muted-like protein	0.25	2	26.00	73	85