c2pfam

AT4G23940.1 :

Domain Description Evalue Bits GA Start End
Zeta_toxin Zeta toxin 0.087 2 20.10 412 461
ATPase KaiC 0.0012 8 26.60 455 481
AAA_16 AAA ATPase domain 8.6E-05 13 32.60 462 484
Zeta_toxin Zeta toxin 0.0024 7 20.10 462 486
TIP49 TIP49 C-terminus 1.5E-06 18 23.80 464 500
Mg_chelatase Magnesium chelatase, subunit ChlI 1.1E-05 15 20.30 464 484
IstB_IS21 IstB-like ATP binding protein 0.00019 11 24.10 464 531
RuvB_N Holliday junction DNA helicase ruvB N-terminus 5.7E-08 23 20.00 465 542
AAA_5 AAA domain (dynein-related subfamily) 1.2E-07 22 20.80 465 593
AAA ATPase family associated with various cellular activities (AAA) 0 142 20.80 466 606
AAA_14 AAA domain 0.00027 11 27.00 466 535
AAA_28 AAA domain 0.00016 12 27.00 466 504
AAA_18 AAA domain 3E-05 15 29.40 466 550
AAA_2 AAA domain (Cdc48 subfamily) 9.6E-05 13 20.60 466 540
AAA_22 AAA domain 0.0013 9 27.00 467 487
AAA_17 AAA domain 3.3E-07 21 27.00 470 525
AAA_22 AAA domain 0.0063 7 27.00 509 588
AAA_16 AAA ATPase domain 0.098 3 32.60 510 541
ATPase KaiC 0.14 2 26.60 518 560
AAA_lid_3 AAA+ lid domain 1.1E-10 31 27.20 629 672
Peptidase_M41 Peptidase family M41 1.9E-14 44 20.60 709 801
Peptidase_M41 Peptidase family M41 0.0011 9 20.60 846 895

946

Zeta_toxin
ATPase
AAA_16
Zeta_toxin
TIP49
Mg_chelatase
IstB_IS21
RuvB_N
AAA_5
AAA
AAA_14
AAA_28
AAA_18
AAA_2
AAA_22
AAA_17
AAA_22
AAA_16
ATPase
AAA_lid_3
Peptidase_M41
Peptidase_M41

References:

IstB_IS21

AAA_16

AAA_14

AAA_lid_3

Peptidase_M41

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

AAA_17

ATPase

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_28

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_22

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
Zeta_toxin	Zeta toxin	0.087	2	20.10	412	461
ATPase	KaiC	0.0012	8	26.60	455	481
AAA_16	AAA ATPase domain	8.6E-05	13	32.60	462	484
Zeta_toxin	Zeta toxin	0.0024	7	20.10	462	486
TIP49	TIP49 C-terminus	1.5E-06	18	23.80	464	500
Mg_chelatase	Magnesium chelatase, subunit ChlI	1.1E-05	15	20.30	464	484
IstB_IS21	IstB-like ATP binding protein	0.00019	11	24.10	464	531
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	5.7E-08	23	20.00	465	542
AAA_5	AAA domain (dynein-related subfamily)	1.2E-07	22	20.80	465	593
AAA	ATPase family associated with various cellular activities (AAA)	0	142	20.80	466	606
AAA_14	AAA domain	0.00027	11	27.00	466	535
AAA_28	AAA domain	0.00016	12	27.00	466	504
AAA_18	AAA domain	3E-05	15	29.40	466	550
AAA_2	AAA domain (Cdc48 subfamily)	9.6E-05	13	20.60	466	540
AAA_22	AAA domain	0.0013	9	27.00	467	487
AAA_17	AAA domain	3.3E-07	21	27.00	470	525
AAA_22	AAA domain	0.0063	7	27.00	509	588
AAA_16	AAA ATPase domain	0.098	3	32.60	510	541
ATPase	KaiC	0.14	2	26.60	518	560
AAA_lid_3	AAA+ lid domain	1.1E-10	31	27.20	629	672
Peptidase_M41	Peptidase family M41	1.9E-14	44	20.60	709	801
Peptidase_M41	Peptidase family M41	0.0011	9	20.60	846	895