c2pfam

AT4G24270.1 :

Domain Description Evalue Bits GA Start End
BORG_CEP Cdc42 effector 0.46 1 25.00 15 49
NRDE-2 NRDE-2, necessary for RNA interference 0.00013 10 34.00 35 132
DUF4806 Domain of unknown function (DUF4806) 0.0012 8 25.00 47 79
TPR_19 Tetratricopeptide repeat 0.082 3 25.00 54 84
TPR_14 Tetratricopeptide repeat 0.0038 8 23.50 68 108
Suf Suppressor of forked protein (Suf) 0.75 -1 20.40 68 87
Suf Suppressor of forked protein (Suf) 0.016 4 20.40 162 198
DUF4806 Domain of unknown function (DUF4806) 0.28 1 25.00 279 317
Suf Suppressor of forked protein (Suf) 0.043 3 20.40 298 369
TPR_14 Tetratricopeptide repeat 0.0031 8 23.50 300 334
TPR_19 Tetratricopeptide repeat 0.016 5 25.00 307 334
NRDE-2 NRDE-2, necessary for RNA interference 0.0047 5 34.00 315 370
BORG_CEP Cdc42 effector 0.13 3 25.00 319 455
TPR_14 Tetratricopeptide repeat 0.66 1 23.50 365 372
Suf Suppressor of forked protein (Suf) 2E-06 17 20.40 456 641
TPR_14 Tetratricopeptide repeat 0.086 3 23.50 466 494
TPR_19 Tetratricopeptide repeat 0.076 3 25.00 468 509
NRDE-2 NRDE-2, necessary for RNA interference 0.035 2 34.00 476 514
TPR_14 Tetratricopeptide repeat 0.0038 8 23.50 488 513
BORG_CEP Cdc42 effector 0.001 9 25.00 551 637
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-14 43 20.70 654 721
Lsm_interact Lsm interaction motif 9E-12 34 21.40 797 815

816

BORG_CEP
NRDE-2
DUF4806
TPR_19
TPR_14
Suf
Suf
DUF4806
Suf
TPR_14
TPR_19
NRDE-2
BORG_CEP
TPR_14
Suf
TPR_14
TPR_19
NRDE-2
TPR_14
BORG_CEP
RRM_1
Lsm_interact

References:

Lsm_interact
12458792 A conserved Lsm-interaction motif in Prp24 required for efficient U4/U6 di-snRNP formation. RNA 2002;8:1378-1392.

Suf
9826695 Autoregulation at the level of mRNA 3' end formation of the suppressor of forked gene of Drosophila melanogaster is conserved in Drosophila virilis. Proc Natl Acad Sci U S A 1998;95:14302-14307.

NRDE-2

TPR_19

BORG_CEP

RRM_1
8290338 Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acid Res 1993;21:5803-5816.

TPR_14

DUF4806

Domain	Description	Evalue	Bits	GA	Start	End
BORG_CEP	Cdc42 effector	0.46	1	25.00	15	49
NRDE-2	NRDE-2, necessary for RNA interference	0.00013	10	34.00	35	132
DUF4806	Domain of unknown function (DUF4806)	0.0012	8	25.00	47	79
TPR_19	Tetratricopeptide repeat	0.082	3	25.00	54	84
TPR_14	Tetratricopeptide repeat	0.0038	8	23.50	68	108
Suf	Suppressor of forked protein (Suf)	0.75	-1	20.40	68	87
Suf	Suppressor of forked protein (Suf)	0.016	4	20.40	162	198
DUF4806	Domain of unknown function (DUF4806)	0.28	1	25.00	279	317
Suf	Suppressor of forked protein (Suf)	0.043	3	20.40	298	369
TPR_14	Tetratricopeptide repeat	0.0031	8	23.50	300	334
TPR_19	Tetratricopeptide repeat	0.016	5	25.00	307	334
NRDE-2	NRDE-2, necessary for RNA interference	0.0047	5	34.00	315	370
BORG_CEP	Cdc42 effector	0.13	3	25.00	319	455
TPR_14	Tetratricopeptide repeat	0.66	1	23.50	365	372
Suf	Suppressor of forked protein (Suf)	2E-06	17	20.40	456	641
TPR_14	Tetratricopeptide repeat	0.086	3	23.50	466	494
TPR_19	Tetratricopeptide repeat	0.076	3	25.00	468	509
NRDE-2	NRDE-2, necessary for RNA interference	0.035	2	34.00	476	514
TPR_14	Tetratricopeptide repeat	0.0038	8	23.50	488	513
BORG_CEP	Cdc42 effector	0.001	9	25.00	551	637
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	1.9E-14	43	20.70	654	721
Lsm_interact	Lsm interaction motif	9E-12	34	21.40	797	815