c2pfam

AT4G24710.1 :

Domain Description Evalue Bits GA Start End
AAA_22 AAA domain 0.31 3 27.00 62 105
AAA_25 AAA domain 0.00074 10 27.00 198 223
AAA_7 P-loop containing dynein motor region 0.00011 13 25.80 198 227
AAA_11 AAA domain 2.5E-05 15 27.00 199 227
AAA_30 AAA domain 2.4E-05 15 27.00 200 289
AAA_13 AAA domain 0.00014 12 36.00 201 241
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 6.4E-06 18 26.60 201 230
AAA_19 AAA domain 0.00061 11 25.10 202 226
Rad17 Rad17 cell cycle checkpoint protein 9.6E-05 14 19.70 202 231
ATPase KaiC 0.0034 8 26.60 202 220
ABC_tran ABC transporter 7.8E-05 15 23.10 202 265
AAA_14 AAA domain 2E-07 22 27.00 202 293
ATPase_2 ATPase domain predominantly from Archaea 0.0045 8 33.20 202 226
TIP49 TIP49 C-terminus 7.3E-06 17 23.80 203 276
NACHT NACHT domain 4.3E-06 18 20.40 203 329
AAA_22 AAA domain 4.6E-10 31 27.00 203 291
AAA_16 AAA ATPase domain 2.1E-09 29 32.60 203 319
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.00011 13 20.50 203 241
IstB_IS21 IstB-like ATP binding protein 0.00014 13 24.10 203 226
DUF2075 Uncharacterized conserved protein (DUF2075) 0.00034 11 20.30 203 268
CPT Chloramphenicol phosphotransferase-like protein 0.00051 11 21.00 203 225
AAA_24 AAA domain 2.4E-05 15 27.00 204 287
KAP_NTPase KAP family P-loop domain 0.0026 8 20.00 204 272
Mg_chelatase Magnesium chelatase, subunit ChlI 0.00032 11 20.30 205 227
AAA_18 AAA domain 2.8E-08 26 29.40 205 274
AAA_2 AAA domain (Cdc48 subfamily) 1.4E-07 23 20.60 205 316
AAA ATPase family associated with various cellular activities (AAA) 2.5E-35 113 20.80 205 350
RuvB_N Holliday junction DNA helicase ruvB N-terminus 1.7E-05 16 20.00 205 230
RNA_helicase RNA helicase 1.4E-05 17 21.50 205 229
Viral_helicase1 Viral (Superfamily 1) RNA helicase 1.3E-05 16 20.90 205 288
DUF815 Protein of unknown function (DUF815) 3.7E-05 14 20.10 205 247
AAA_5 AAA domain (dynein-related subfamily) 1.4E-05 16 20.80 205 233
AAA_33 AAA domain 4.7E-06 18 27.00 205 258
AAA_28 AAA domain 9E-06 17 27.00 205 234
NTPase_1 NTPase 0.00089 10 23.90 205 227
AAA_3 ATPase family associated with various cellular activities (AAA) 0.00081 11 21.10 205 229
Cytidylate_kin Cytidylate kinase 1.8E-06 19 20.40 206 334
AAA_17 AAA domain 0.00024 13 27.00 209 229
KAP_NTPase KAP family P-loop domain 0.048 4 20.00 246 289
ATPase_2 ATPase domain predominantly from Archaea 0.0022 9 33.20 248 316
AAA_25 AAA domain 0.031 5 27.00 255 326
ATPase KaiC 0.26 2 26.60 256 294

467

AAA_22
AAA_25
AAA_7
AAA_11
AAA_30
AAA_13
TsaE
AAA_19
Rad17
ATPase
ABC_tran
AAA_14
ATPase_2
TIP49
NACHT
AAA_22
AAA_16
PduV-EutP
IstB_IS21
DUF2075
CPT
AAA_24
KAP_NTPase
Mg_chelatase
AAA_18
AAA_2
AAA
RuvB_N
RNA_helicase
Viral_helicase1
DUF815
AAA_5
AAA_33
AAA_28
NTPase_1
AAA_3
Cytidylate_kin
AAA_17
KAP_NTPase
ATPase_2
AAA_25
ATPase

References:

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_3
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

CPT
11468347 Structural basis for chloramphenicol tolerance in Streptomyces venezuelae by chloramphenicol phosphotransferase activity. Protein Sci 2001;10:1508-1513.

PduV-EutP
15516577 Evidence that a B12-adenosyl transferase is encoded within the ethanolamine operon of Salmonella enterica. J Bacteriol. 2004;186:7635-7644.
10464203 The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins. J Bacteriol 1999;181:5317-5329.
10498708 The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation. J Bacteriol. 1999;181:5967-5975.

TsaE

DUF2075

IstB_IS21

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

ATPase_2

ATPase

Cytidylate_kin
9862805 Structures of escherichia coli CMP kinase alone and in complex with CDP: a new fold of the nucleoside monophosphate binding domain and insights into cytosine nucleotide specificity. Structure 1998;6:1517-1527.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

DUF815

KAP_NTPase
15128444 A novel family of P-loop NTPases with an unusual phyletic distribution and transmembrane segments inserted within the NTPase domain. Genome Biol 2004;5:R30.

AAA_7

Viral_helicase1
8269709 Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 1993;28:375-430.
10217401 RNA helicase activity of Semliki Forest virus replicase protein NSP2. FEBS Lett 1999;448:19-22.
8057461 ATPase and GTPase activities associated with Semliki Forest virus nonstructural protein nsP2. J Virol 1994;68:5804-5810.
10982322 Helicase and capping enzyme active site mutations in brome mosaic virus protein 1a cause defects in template recruitment, negative-strand RNA synthesis, and viral RNA capping. J Virol 2000;74:8803-8811.

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_33

AAA_30

NTPase_1

AAA_28

AAA_25

AAA_24

AAA_22

AAA_19

AAA_18

AAA_17

AAA_16

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

AAA_13

AAA_11

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

AAA_14

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

Domain	Description	Evalue	Bits	GA	Start	End
AAA_22	AAA domain	0.31	3	27.00	62	105
AAA_25	AAA domain	0.00074	10	27.00	198	223
AAA_7	P-loop containing dynein motor region	0.00011	13	25.80	198	227
AAA_11	AAA domain	2.5E-05	15	27.00	199	227
AAA_30	AAA domain	2.4E-05	15	27.00	200	289
AAA_13	AAA domain	0.00014	12	36.00	201	241
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	6.4E-06	18	26.60	201	230
AAA_19	AAA domain	0.00061	11	25.10	202	226
Rad17	Rad17 cell cycle checkpoint protein	9.6E-05	14	19.70	202	231
ATPase	KaiC	0.0034	8	26.60	202	220
ABC_tran	ABC transporter	7.8E-05	15	23.10	202	265
AAA_14	AAA domain	2E-07	22	27.00	202	293
ATPase_2	ATPase domain predominantly from Archaea	0.0045	8	33.20	202	226
TIP49	TIP49 C-terminus	7.3E-06	17	23.80	203	276
NACHT	NACHT domain	4.3E-06	18	20.40	203	329
AAA_22	AAA domain	4.6E-10	31	27.00	203	291
AAA_16	AAA ATPase domain	2.1E-09	29	32.60	203	319
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.00011	13	20.50	203	241
IstB_IS21	IstB-like ATP binding protein	0.00014	13	24.10	203	226
DUF2075	Uncharacterized conserved protein (DUF2075)	0.00034	11	20.30	203	268
CPT	Chloramphenicol phosphotransferase-like protein	0.00051	11	21.00	203	225
AAA_24	AAA domain	2.4E-05	15	27.00	204	287
KAP_NTPase	KAP family P-loop domain	0.0026	8	20.00	204	272
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.00032	11	20.30	205	227
AAA_18	AAA domain	2.8E-08	26	29.40	205	274
AAA_2	AAA domain (Cdc48 subfamily)	1.4E-07	23	20.60	205	316
AAA	ATPase family associated with various cellular activities (AAA)	2.5E-35	113	20.80	205	350
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	1.7E-05	16	20.00	205	230
RNA_helicase	RNA helicase	1.4E-05	17	21.50	205	229
Viral_helicase1	Viral (Superfamily 1) RNA helicase	1.3E-05	16	20.90	205	288
DUF815	Protein of unknown function (DUF815)	3.7E-05	14	20.10	205	247
AAA_5	AAA domain (dynein-related subfamily)	1.4E-05	16	20.80	205	233
AAA_33	AAA domain	4.7E-06	18	27.00	205	258
AAA_28	AAA domain	9E-06	17	27.00	205	234
NTPase_1	NTPase	0.00089	10	23.90	205	227
AAA_3	ATPase family associated with various cellular activities (AAA)	0.00081	11	21.10	205	229
Cytidylate_kin	Cytidylate kinase	1.8E-06	19	20.40	206	334
AAA_17	AAA domain	0.00024	13	27.00	209	229
KAP_NTPase	KAP family P-loop domain	0.048	4	20.00	246	289
ATPase_2	ATPase domain predominantly from Archaea	0.0022	9	33.20	248	316
AAA_25	AAA domain	0.031	5	27.00	255	326
ATPase	KaiC	0.26	2	26.60	256	294