c2pfam

AT4G25500.1 :

Domain Description Evalue Bits GA Start End
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-18 55 20.70 4 62
RNA_bind RNA binding domain 0.00095 8 23.60 8 55
RRM_3 RNA binding motif 0.0065 6 21.30 12 58
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.4E-05 13 27.00 20 74
DUF2129 Uncharacterized protein conserved in bacteria (DUF2129) 4.7E-05 12 22.00 21 60
Nup35_RRM_2 Nup53/35/40-type RNA recognition motif 0.064 2 27.00 22 51
DbpA DbpA RNA binding domain 0.00086 8 23.10 27 70
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2E-05 13 27.00 90 165
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-16 49 20.70 99 161
RNA_bind RNA binding domain 2.2E-05 14 23.60 100 160
RRM_3 RNA binding motif 0.002 7 21.30 107 170
DUF2129 Uncharacterized protein conserved in bacteria (DUF2129) 0.29 0 22.00 116 150
Nup35_RRM_2 Nup53/35/40-type RNA recognition motif 3.5E-07 19 27.00 116 148
DbpA DbpA RNA binding domain 0.00097 8 23.10 123 164

350

RRM_1
RNA_bind
RRM_3
RRM_5
DUF2129
Nup35_RRM_2
DbpA
RRM_5
RRM_1
RNA_bind
RRM_3
DUF2129
Nup35_RRM_2
DbpA

References:

RRM_5

Nup35_RRM_2

RRM_3
12842046 Structure of the C-terminal domain of human La protein reveals a novel RNA recognition motif coupled to a helical nuclear retention element. Structure. 2003;11:833-843.

DUF2129

RRM_1
8290338 Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acid Res 1993;21:5803-5816.

DbpA
10481020 Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: delineation of a novel sub-family of bacterial DEAD proteins. Nucleic Acids Res 1999;27:3811-3820.
12460566 The carboxy-terminal domain of the DExDH protein YxiN is sufficient to confer specificity for 23S rRNA. J Mol Biol 2002;324:625-636.

RNA_bind

Domain	Description	Evalue	Bits	GA	Start	End
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	2.6E-18	55	20.70	4	62
RNA_bind	RNA binding domain	0.00095	8	23.60	8	55
RRM_3	RNA binding motif	0.0065	6	21.30	12	58
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	2.4E-05	13	27.00	20	74
DUF2129	Uncharacterized protein conserved in bacteria (DUF2129)	4.7E-05	12	22.00	21	60
Nup35_RRM_2	Nup53/35/40-type RNA recognition motif	0.064	2	27.00	22	51
DbpA	DbpA RNA binding domain	0.00086	8	23.10	27	70
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	2E-05	13	27.00	90	165
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	1.6E-16	49	20.70	99	161
RNA_bind	RNA binding domain	2.2E-05	14	23.60	100	160
RRM_3	RNA binding motif	0.002	7	21.30	107	170
DUF2129	Uncharacterized protein conserved in bacteria (DUF2129)	0.29	0	22.00	116	150
Nup35_RRM_2	Nup53/35/40-type RNA recognition motif	3.5E-07	19	27.00	116	148
DbpA	DbpA RNA binding domain	0.00097	8	23.10	123	164