c2pfam

AT4G26090.1 :

Domain Description Evalue Bits GA Start End
T2SSE Type II/IV secretion system protein 1.9E-05 14 24.90 147 202
NB-ARC NB-ARC domain 0 275 23.50 159 398
KAP_NTPase KAP family P-loop domain 7E-05 13 20.00 161 202
AAA_16 AAA ATPase domain 2.4E-06 19 32.60 163 203
RsgA_GTPase RsgA GTPase 0.00032 11 30.00 163 199
AAA_23 AAA domain 0.00022 12 27.00 164 195
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 3E-05 14 23.10 165 209
ATPase_2 ATPase domain predominantly from Archaea 3E-07 21 33.20 166 209
AAA_22 AAA domain 1.7E-06 19 27.00 173 264
AAA_14 AAA domain 0.00013 13 27.00 176 289
ABC_tran ABC transporter 0.00075 11 23.10 177 200
AAA_24 AAA domain 0.0003 11 27.00 178 198
NTPase_1 NTPase 0.00028 11 23.90 179 207
RNA_helicase RNA helicase 0.00017 13 21.50 180 205
AAA ATPase family associated with various cellular activities (AAA) 7.6E-05 14 20.80 180 205
Bac_DnaA Bacterial dnaA protein 0.00039 11 20.40 180 208
NACHT NACHT domain 6.3E-07 20 20.40 180 264
ABC_tran ABC transporter 0.19 3 23.10 241 263
ATPase_2 ATPase domain predominantly from Archaea 0.38 1 33.20 301 354
DUF4351 Domain of unknown function (DUF4351) 0.001 10 25.00 511 542
LRR_4 Leucine Rich repeats (2 copies) 0.00033 12 27.00 516 549
LRR_8 Leucine rich repeat 1.5E-12 38 27.00 533 593
LRR_4 Leucine Rich repeats (2 copies) 2.7E-06 18 27.00 560 597
LRR_1 Leucine Rich Repeat 0.38 3 20.60 560 576
LRR_4 Leucine Rich repeats (2 copies) 9.8E-06 17 27.00 583 620
LRR_8 Leucine rich repeat 2.5E-07 21 27.00 583 636
LRR_4 Leucine Rich repeats (2 copies) 0.0032 9 27.00 605 636
LRR_1 Leucine Rich Repeat 0.04 6 20.60 605 623
LRR_1 Leucine Rich Repeat 0.81 2 20.60 718 729
LRR_4 Leucine Rich repeats (2 copies) 0.019 6 27.00 718 754
LRR_8 Leucine rich repeat 0.14 3 27.00 718 783
LRR_8 Leucine rich repeat 0.0079 7 27.00 746 805
LRR_4 Leucine Rich repeats (2 copies) 9.5E-05 13 27.00 773 811

909

T2SSE
NB-ARC
KAP_NTPase
AAA_16
RsgA_GTPase
AAA_23
MeaB
ATPase_2
AAA_22
AAA_14
ABC_tran
AAA_24
NTPase_1
RNA_helicase
AAA
Bac_DnaA
NACHT
ABC_tran
ATPase_2
DUF4351
LRR_4
LRR_8
LRR_4
LRR_1
LRR_4
LRR_8
LRR_4
LRR_1
LRR_1
LRR_4
LRR_8
LRR_8
LRR_4

References:

AAA_16

AAA_14

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

Bac_DnaA

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

RsgA_GTPase

T2SSE

LRR_1
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

LRR_8

MeaB

NTPase_1

KAP_NTPase
15128444 A novel family of P-loop NTPases with an unusual phyletic distribution and transmembrane segments inserted within the NTPase domain. Genome Biol 2004;5:R30.

ATPase_2

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

DUF4351

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA_24

AAA_23

AAA_22

LRR_4

Domain	Description	Evalue	Bits	GA	Start	End
T2SSE	Type II/IV secretion system protein	1.9E-05	14	24.90	147	202
NB-ARC	NB-ARC domain	0	275	23.50	159	398
KAP_NTPase	KAP family P-loop domain	7E-05	13	20.00	161	202
AAA_16	AAA ATPase domain	2.4E-06	19	32.60	163	203
RsgA_GTPase	RsgA GTPase	0.00032	11	30.00	163	199
AAA_23	AAA domain	0.00022	12	27.00	164	195
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	3E-05	14	23.10	165	209
ATPase_2	ATPase domain predominantly from Archaea	3E-07	21	33.20	166	209
AAA_22	AAA domain	1.7E-06	19	27.00	173	264
AAA_14	AAA domain	0.00013	13	27.00	176	289
ABC_tran	ABC transporter	0.00075	11	23.10	177	200
AAA_24	AAA domain	0.0003	11	27.00	178	198
NTPase_1	NTPase	0.00028	11	23.90	179	207
RNA_helicase	RNA helicase	0.00017	13	21.50	180	205
AAA	ATPase family associated with various cellular activities (AAA)	7.6E-05	14	20.80	180	205
Bac_DnaA	Bacterial dnaA protein	0.00039	11	20.40	180	208
NACHT	NACHT domain	6.3E-07	20	20.40	180	264
ABC_tran	ABC transporter	0.19	3	23.10	241	263
ATPase_2	ATPase domain predominantly from Archaea	0.38	1	33.20	301	354
DUF4351	Domain of unknown function (DUF4351)	0.001	10	25.00	511	542
LRR_4	Leucine Rich repeats (2 copies)	0.00033	12	27.00	516	549
LRR_8	Leucine rich repeat	1.5E-12	38	27.00	533	593
LRR_4	Leucine Rich repeats (2 copies)	2.7E-06	18	27.00	560	597
LRR_1	Leucine Rich Repeat	0.38	3	20.60	560	576
LRR_4	Leucine Rich repeats (2 copies)	9.8E-06	17	27.00	583	620
LRR_8	Leucine rich repeat	2.5E-07	21	27.00	583	636
LRR_4	Leucine Rich repeats (2 copies)	0.0032	9	27.00	605	636
LRR_1	Leucine Rich Repeat	0.04	6	20.60	605	623
LRR_1	Leucine Rich Repeat	0.81	2	20.60	718	729
LRR_4	Leucine Rich repeats (2 copies)	0.019	6	27.00	718	754
LRR_8	Leucine rich repeat	0.14	3	27.00	718	783
LRR_8	Leucine rich repeat	0.0079	7	27.00	746	805
LRR_4	Leucine Rich repeats (2 copies)	9.5E-05	13	27.00	773	811