c2pfam

AT4G26680.1 :

Domain Description Evalue Bits GA Start End
TPR_1 Tetratricopeptide repeat 0.21 2 20.40 89 111
PPR PPR repeat 0.13 3 25.00 121 144
PPR_long Pentacotripeptide-repeat region of PRORP 1.3E-07 21 27.00 122 283
TPR_10 Tetratricopeptide repeat 0.6 0 27.50 124 142
MSA-2c Merozoite surface antigen 2c 0.12 2 20.60 143 193
ATP13 Mitochondrial ATPase expression 0.29 1 26.70 151 180
AEP1 ATPase expression protein 1 0.027 3 27.00 168 213
PPR PPR repeat 0.013 6 25.00 171 199
PPR_2 PPR repeat family 0.00028 11 30.00 171 203
PPR_3 Pentatricopeptide repeat domain 0.00031 11 25.00 172 211
PPR_2 PPR repeat family 7.8E-15 45 30.00 201 249
PPR PPR repeat 0.0001 12 25.00 205 233
PPR_3 Pentatricopeptide repeat domain 0.00045 10 25.00 206 248
TPR_14 Tetratricopeptide repeat 0.11 4 23.50 209 243
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.24 0 25.90 213 254
TPR_10 Tetratricopeptide repeat 0.3 1 27.50 215 228
PPR_1 PPR repeat 0.0045 7 23.80 217 230
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 1 0 26.10 224 250
AEP1 ATPase expression protein 1 0.034 3 27.00 225 264
ATP13 Mitochondrial ATPase expression 0.038 4 26.70 234 263
PPR_1 PPR repeat 5.6E-11 32 23.80 234 265
PPR_2 PPR repeat family 7.9E-08 22 30.00 240 273
PPR PPR repeat 3.2E-10 30 25.00 240 269
PPR_3 Pentatricopeptide repeat domain 1.6E-11 34 25.00 260 315
PPR_1 PPR repeat 1.4E-09 27 23.80 268 299
PPR_2 PPR repeat family 1E-19 60 30.00 274 320
PPR PPR repeat 1.6E-08 24 25.00 274 304
PPR_long Pentacotripeptide-repeat region of PRORP 4.5E-06 16 27.00 293 350
PPR_3 Pentatricopeptide repeat domain 4.9E-19 58 25.00 295 353
ATP13 Mitochondrial ATPase expression 0.28 1 26.70 296 330
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.4 -1 25.90 301 334
PPR_1 PPR repeat 4.4E-18 55 23.80 303 335
PPR_2 PPR repeat family 2.5E-16 50 30.00 306 346
PPR PPR repeat 8.5E-11 32 25.00 309 336
AEP1 ATPase expression protein 1 0.055 2 27.00 309 359
PPR_1 PPR repeat 1.8E-11 34 23.80 339 370
PPR_2 PPR repeat family 4.4E-21 65 30.00 341 390
PPR PPR repeat 3.3E-12 36 25.00 344 374
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.097 1 25.90 345 410
TPR_10 Tetratricopeptide repeat 0.0041 7 27.50 345 369
TPR_1 Tetratricopeptide repeat 0.0048 7 20.40 345 367
PPR_long Pentacotripeptide-repeat region of PRORP 6.8E-15 45 27.00 347 508
TPR_14 Tetratricopeptide repeat 0.063 4 23.50 348 369
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.19 2 26.10 348 391
PPR_3 Pentatricopeptide repeat domain 3.9E-11 33 25.00 366 420
PPR_1 PPR repeat 1.6E-09 27 23.80 372 403
PPR_2 PPR repeat family 3E-13 40 30.00 377 424
PPR PPR repeat 1.7E-05 15 25.00 380 408
MSA-2c Merozoite surface antigen 2c 0.04 4 20.60 392 436
ATP13 Mitochondrial ATPase expression 0.06 3 26.70 401 440
PPR_3 Pentatricopeptide repeat domain 2.4E-08 24 25.00 403 458
PPR_1 PPR repeat 2.8E-05 14 23.80 408 439
PPR PPR repeat 1.6E-06 18 25.00 414 444
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.0042 7 26.10 415 462
PPR_2 PPR repeat family 4.7E-11 33 30.00 418 460
MRP-S27 Mitochondrial 28S ribosomal protein S27 5.7E-07 18 25.90 420 477
ATP13 Mitochondrial ATPase expression 0.0026 8 26.70 441 476
PPR_1 PPR repeat 1.5E-13 40 23.80 443 475
AEP1 ATPase expression protein 1 0.14 1 27.00 446 487
PPR_2 PPR repeat family 2.6E-10 30 30.00 450 493
PPR PPR repeat 1E-08 25 25.00 450 478
TPR_14 Tetratricopeptide repeat 0.0057 8 23.50 453 480
PPR_3 Pentatricopeptide repeat domain 0.001 9 25.00 470 513
MSA-2c Merozoite surface antigen 2c 0.11 2 20.60 473 520
PPR PPR repeat 0.23 2 25.00 492 513

521

TPR_1
PPR
PPR_long
TPR_10
MSA-2c
ATP13
AEP1
PPR
PPR_2
PPR_3
PPR_2
PPR
PPR_3
TPR_14
MRP-S27
TPR_10
PPR_1
RPM2
AEP1
ATP13
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_3
ATP13
MRP-S27
PPR_1
PPR_2
PPR
AEP1
PPR_1
PPR_2
PPR
MRP-S27
TPR_10
TPR_1
PPR_long
TPR_14
RPM2
PPR_3
PPR_1
PPR_2
PPR
MSA-2c
ATP13
PPR_3
PPR_1
PPR
RPM2
PPR_2
MRP-S27
ATP13
PPR_1
AEP1
PPR_2
PPR
TPR_14
PPR_3
MSA-2c
PPR

References:

AEP1

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

TPR_14

PPR_1

PPR_2

TPR_10

ATP13

RPM2
1409716 A 105-kDa protein is required for yeast mitochondrial RNase P activity. Proc Natl Acad Sci U S A. 1992;89:9875-9879.
16024791 Rpm2p, a component of yeast mitochondrial RNase P, acts as a transcriptional activator in the nucleus. Mol Cell Biol. 2005;25:6546-6558.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

MSA-2c
19120194 msa-1 and msa-2c gene analysis and common epitopes assessment in Mexican Babesia bovis isolates. Ann N Y Acad Sci. 2008;1149:145-148.

Domain	Description	Evalue	Bits	GA	Start	End
TPR_1	Tetratricopeptide repeat	0.21	2	20.40	89	111
PPR	PPR repeat	0.13	3	25.00	121	144
PPR_long	Pentacotripeptide-repeat region of PRORP	1.3E-07	21	27.00	122	283
TPR_10	Tetratricopeptide repeat	0.6	0	27.50	124	142
MSA-2c	Merozoite surface antigen 2c	0.12	2	20.60	143	193
ATP13	Mitochondrial ATPase expression	0.29	1	26.70	151	180
AEP1	ATPase expression protein 1	0.027	3	27.00	168	213
PPR	PPR repeat	0.013	6	25.00	171	199
PPR_2	PPR repeat family	0.00028	11	30.00	171	203
PPR_3	Pentatricopeptide repeat domain	0.00031	11	25.00	172	211
PPR_2	PPR repeat family	7.8E-15	45	30.00	201	249
PPR	PPR repeat	0.0001	12	25.00	205	233
PPR_3	Pentatricopeptide repeat domain	0.00045	10	25.00	206	248
TPR_14	Tetratricopeptide repeat	0.11	4	23.50	209	243
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.24	0	25.90	213	254
TPR_10	Tetratricopeptide repeat	0.3	1	27.50	215	228
PPR_1	PPR repeat	0.0045	7	23.80	217	230
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	1	0	26.10	224	250
AEP1	ATPase expression protein 1	0.034	3	27.00	225	264
ATP13	Mitochondrial ATPase expression	0.038	4	26.70	234	263
PPR_1	PPR repeat	5.6E-11	32	23.80	234	265
PPR_2	PPR repeat family	7.9E-08	22	30.00	240	273
PPR	PPR repeat	3.2E-10	30	25.00	240	269
PPR_3	Pentatricopeptide repeat domain	1.6E-11	34	25.00	260	315
PPR_1	PPR repeat	1.4E-09	27	23.80	268	299
PPR_2	PPR repeat family	1E-19	60	30.00	274	320
PPR	PPR repeat	1.6E-08	24	25.00	274	304
PPR_long	Pentacotripeptide-repeat region of PRORP	4.5E-06	16	27.00	293	350
PPR_3	Pentatricopeptide repeat domain	4.9E-19	58	25.00	295	353
ATP13	Mitochondrial ATPase expression	0.28	1	26.70	296	330
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.4	-1	25.90	301	334
PPR_1	PPR repeat	4.4E-18	55	23.80	303	335
PPR_2	PPR repeat family	2.5E-16	50	30.00	306	346
PPR	PPR repeat	8.5E-11	32	25.00	309	336
AEP1	ATPase expression protein 1	0.055	2	27.00	309	359
PPR_1	PPR repeat	1.8E-11	34	23.80	339	370
PPR_2	PPR repeat family	4.4E-21	65	30.00	341	390
PPR	PPR repeat	3.3E-12	36	25.00	344	374
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.097	1	25.90	345	410
TPR_10	Tetratricopeptide repeat	0.0041	7	27.50	345	369
TPR_1	Tetratricopeptide repeat	0.0048	7	20.40	345	367
PPR_long	Pentacotripeptide-repeat region of PRORP	6.8E-15	45	27.00	347	508
TPR_14	Tetratricopeptide repeat	0.063	4	23.50	348	369
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.19	2	26.10	348	391
PPR_3	Pentatricopeptide repeat domain	3.9E-11	33	25.00	366	420
PPR_1	PPR repeat	1.6E-09	27	23.80	372	403
PPR_2	PPR repeat family	3E-13	40	30.00	377	424
PPR	PPR repeat	1.7E-05	15	25.00	380	408
MSA-2c	Merozoite surface antigen 2c	0.04	4	20.60	392	436
ATP13	Mitochondrial ATPase expression	0.06	3	26.70	401	440
PPR_3	Pentatricopeptide repeat domain	2.4E-08	24	25.00	403	458
PPR_1	PPR repeat	2.8E-05	14	23.80	408	439
PPR	PPR repeat	1.6E-06	18	25.00	414	444
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.0042	7	26.10	415	462
PPR_2	PPR repeat family	4.7E-11	33	30.00	418	460
MRP-S27	Mitochondrial 28S ribosomal protein S27	5.7E-07	18	25.90	420	477
ATP13	Mitochondrial ATPase expression	0.0026	8	26.70	441	476
PPR_1	PPR repeat	1.5E-13	40	23.80	443	475
AEP1	ATPase expression protein 1	0.14	1	27.00	446	487
PPR_2	PPR repeat family	2.6E-10	30	30.00	450	493
PPR	PPR repeat	1E-08	25	25.00	450	478
TPR_14	Tetratricopeptide repeat	0.0057	8	23.50	453	480
PPR_3	Pentatricopeptide repeat domain	0.001	9	25.00	470	513
MSA-2c	Merozoite surface antigen 2c	0.11	2	20.60	473	520
PPR	PPR repeat	0.23	2	25.00	492	513