c2pfam

AT4G26800.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 4.9E-06 16 30.00 3 24
PPR_3 Pentatricopeptide repeat domain 1.1E-06 18 25.00 3 48
PPR_long Pentacotripeptide-repeat region of PRORP 0.013 4 27.00 3 45
PPR_1 PPR repeat 5.9E-09 25 23.80 8 40
PPR_2 PPR repeat family 4E-10 29 30.00 11 60
PPR PPR repeat 0.00016 11 25.00 14 44
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.0046 5 21.90 37 65
PPR_3 Pentatricopeptide repeat domain 3E-12 36 25.00 39 91
PPR_1 PPR repeat 3.1E-08 23 23.80 42 75
PPR_2 PPR repeat family 1.2E-17 53 30.00 47 95
PPR PPR repeat 4E-07 19 25.00 52 79
PPR_long Pentacotripeptide-repeat region of PRORP 1.6E-09 27 27.00 61 137
PPR_1 PPR repeat 3.3E-16 48 23.80 77 109
PPR_2 PPR repeat family 8.5E-18 54 30.00 81 130
PPR PPR repeat 5E-09 25 25.00 84 113
PPR_3 Pentatricopeptide repeat domain 2.9E-14 42 25.00 106 160
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.72 -2 21.90 106 133
PPR_1 PPR repeat 6.7E-08 21 23.80 114 135
PPR_2 PPR repeat family 1.2E-16 50 30.00 116 164
PPR PPR repeat 3.3E-09 26 25.00 119 147
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.0017 8 26.10 120 170
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.024 4 26.10 123 156
PPR_long Pentacotripeptide-repeat region of PRORP 1.5E-09 27 27.00 134 237
RabGAP-TBC Rab-GTPase-TBC domain 0.00012 11 24.50 138 194
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.11 1 21.90 139 198
PPR_1 PPR repeat 1.4E-15 46 23.80 148 179
PPR PPR repeat 2.5E-11 33 25.00 154 184
PPR_2 PPR repeat family 2.2E-14 43 30.00 158 200
PPR_3 Pentatricopeptide repeat domain 8.3E-06 15 25.00 170 194
PPR_1 PPR repeat 1.5E-13 40 23.80 182 214
PPR PPR repeat 3.4E-08 23 25.00 189 219
PPR_long Pentacotripeptide-repeat region of PRORP 1.8E-11 33 27.00 194 319
PPR_2 PPR repeat family 1.6E-05 14 30.00 196 223
PPR_3 Pentatricopeptide repeat domain 6.6E-16 47 25.00 209 265
PPR_1 PPR repeat 1.1E-08 24 23.80 217 249
PPR_2 PPR repeat family 2.1E-16 49 30.00 222 268
PPR PPR repeat 1.2E-09 27 25.00 224 254
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.36 -1 21.90 242 282
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.015 5 26.10 243 270
PPR_1 PPR repeat 7E-08 21 23.80 252 284
PPR_2 PPR repeat family 4.9E-17 51 30.00 256 305
PPR PPR repeat 1.3E-06 18 25.00 260 286
PPR_3 Pentatricopeptide repeat domain 2.1E-05 14 25.00 284 335
PPR_2 PPR repeat family 1.4E-15 47 30.00 292 338
PPR_1 PPR repeat 7.7E-11 31 23.80 292 316
PPR PPR repeat 3.6E-09 26 25.00 294 322
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.24 1 26.10 308 340
PPR_1 PPR repeat 0.028 3 23.80 323 343
PPR PPR repeat 0.14 2 25.00 330 348

369

PPR_2
PPR_3
PPR_long
PPR_1
PPR_2
PPR
ECSIT
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR
PPR_3
ECSIT
PPR_1
PPR_2
PPR
RPM2
RPM2
PPR_long
RabGAP-TBC
ECSIT
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_long
PPR_2
PPR_3
PPR_1
PPR_2
PPR
ECSIT
RPM2
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR_1
PPR
RPM2
PPR_1
PPR

References:

RabGAP-TBC

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

RPM2
1409716 A 105-kDa protein is required for yeast mitochondrial RNase P activity. Proc Natl Acad Sci U S A. 1992;89:9875-9879.
16024791 Rpm2p, a component of yeast mitochondrial RNase P, acts as a transcriptional activator in the nucleus. Mol Cell Biol. 2005;25:6546-6558.

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	4.9E-06	16	30.00	3	24
PPR_3	Pentatricopeptide repeat domain	1.1E-06	18	25.00	3	48
PPR_long	Pentacotripeptide-repeat region of PRORP	0.013	4	27.00	3	45
PPR_1	PPR repeat	5.9E-09	25	23.80	8	40
PPR_2	PPR repeat family	4E-10	29	30.00	11	60
PPR	PPR repeat	0.00016	11	25.00	14	44
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.0046	5	21.90	37	65
PPR_3	Pentatricopeptide repeat domain	3E-12	36	25.00	39	91
PPR_1	PPR repeat	3.1E-08	23	23.80	42	75
PPR_2	PPR repeat family	1.2E-17	53	30.00	47	95
PPR	PPR repeat	4E-07	19	25.00	52	79
PPR_long	Pentacotripeptide-repeat region of PRORP	1.6E-09	27	27.00	61	137
PPR_1	PPR repeat	3.3E-16	48	23.80	77	109
PPR_2	PPR repeat family	8.5E-18	54	30.00	81	130
PPR	PPR repeat	5E-09	25	25.00	84	113
PPR_3	Pentatricopeptide repeat domain	2.9E-14	42	25.00	106	160
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.72	-2	21.90	106	133
PPR_1	PPR repeat	6.7E-08	21	23.80	114	135
PPR_2	PPR repeat family	1.2E-16	50	30.00	116	164
PPR	PPR repeat	3.3E-09	26	25.00	119	147
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.0017	8	26.10	120	170
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.024	4	26.10	123	156
PPR_long	Pentacotripeptide-repeat region of PRORP	1.5E-09	27	27.00	134	237
RabGAP-TBC	Rab-GTPase-TBC domain	0.00012	11	24.50	138	194
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.11	1	21.90	139	198
PPR_1	PPR repeat	1.4E-15	46	23.80	148	179
PPR	PPR repeat	2.5E-11	33	25.00	154	184
PPR_2	PPR repeat family	2.2E-14	43	30.00	158	200
PPR_3	Pentatricopeptide repeat domain	8.3E-06	15	25.00	170	194
PPR_1	PPR repeat	1.5E-13	40	23.80	182	214
PPR	PPR repeat	3.4E-08	23	25.00	189	219
PPR_long	Pentacotripeptide-repeat region of PRORP	1.8E-11	33	27.00	194	319
PPR_2	PPR repeat family	1.6E-05	14	30.00	196	223
PPR_3	Pentatricopeptide repeat domain	6.6E-16	47	25.00	209	265
PPR_1	PPR repeat	1.1E-08	24	23.80	217	249
PPR_2	PPR repeat family	2.1E-16	49	30.00	222	268
PPR	PPR repeat	1.2E-09	27	25.00	224	254
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.36	-1	21.90	242	282
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.015	5	26.10	243	270
PPR_1	PPR repeat	7E-08	21	23.80	252	284
PPR_2	PPR repeat family	4.9E-17	51	30.00	256	305
PPR	PPR repeat	1.3E-06	18	25.00	260	286
PPR_3	Pentatricopeptide repeat domain	2.1E-05	14	25.00	284	335
PPR_2	PPR repeat family	1.4E-15	47	30.00	292	338
PPR_1	PPR repeat	7.7E-11	31	23.80	292	316
PPR	PPR repeat	3.6E-09	26	25.00	294	322
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.24	1	26.10	308	340
PPR_1	PPR repeat	0.028	3	23.80	323	343
PPR	PPR repeat	0.14	2	25.00	330	348