c2pfam

AT4G27120.1 :

Domain Description Evalue Bits GA Start End
SID-1_RNA_chan dsRNA-gated channel SID-1 2.1E-05 13 28.70 4 153
EphA2_TM Ephrin type-A receptor 2 transmembrane domain 0.054 4 28.90 6 49
DUF2561 Protein of unknown function (DUF2561) 4.3E-05 14 20.50 7 70
SpoIIIAH SpoIIIAH-like protein 2.7E-06 17 30.60 8 159
MAP17 Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 0.0016 9 29.10 11 83
HTH_PafC PafC helix-turn-helix domain 1 -1 32.00 23 45
Neur_chan_memb Neurotransmitter-gated ion-channel transmembrane region 0.00039 10 23.10 25 155
RNA_polI_A34 DNA-directed RNA polymerase I subunit RPA34.5 0.0035 7 21.40 37 152
SR-25 Nuclear RNA-splicing-associated protein 0.056 3 55.00 46 154
FAM60A Protein Family FAM60A 0.0073 6 27.00 82 167
DDRGK DDRGK domain 0 178 23.30 94 275
FeoC FeoC like transcriptional regulator 0.00062 10 20.90 189 231
HTH_PafC PafC helix-turn-helix domain 1.6E-05 15 32.00 190 246
PCI PCI domain 5.3E-05 14 22.50 192 244
HTH_AsnC-type AsnC-type helix-turn-helix domain 0.00024 11 27.00 203 226
FeoC FeoC like transcriptional regulator 0.0069 7 20.90 251 269

298

SID-1_RNA_chan
EphA2_TM
DUF2561
SpoIIIAH
MAP17
HTH_PafC
Neur_chan_memb
RNA_polI_A34
SR-25
FAM60A
DDRGK
FeoC
HTH_PafC
PCI
HTH_AsnC-type
FeoC

References:

DUF2561

DDRGK

FAM60A

HTH_PafC

HTH_AsnC-type

Neur_chan_memb

FeoC
16718600 Feo--transport of ferrous iron into bacteria. Biometals. 2006;19:143-157.

SR-25
10708573 Molecular cloning and expression analysis of a putative nuclear protein, SR-25. Biochem Biophys Res Commun. 2000;269:444-450.
17952876 Dominant negative Rac1 attenuates paclitaxel-induced apoptosis in human melanoma cells through upregulation of heat shock protein 27: a functional proteomic analysis. Proteomics. 2007;7:4112-4122.

RNA_polI_A34
9121426 A34.5, a nonessential component of yeast RNA polymerase I, cooperates with subunit A14 and DNA topoisomerase I to produce a functional rRNA synthesis machine. Mol Cell Biol 1997;17:1787-1795.

PCI
9644972 The PCI domain: a common theme in three multiprotein complexes. Trends Biochem Sci 1998;23:204-205.
9605331 Homologues of 26S proteasome subunits are regulators of transcription and translation. Protein Sci 1998;7:1250-1254.
17761670 Isolation of the Schizosaccharomyces pombe proteasome subunit Rpn7 and a structure-function study of the PCI domain. J Biol Chem. 2007; [Epub ahead of print]

SpoIIIAH

MAP17

SID-1_RNA_chan

EphA2_TM

Domain	Description	Evalue	Bits	GA	Start	End
SID-1_RNA_chan	dsRNA-gated channel SID-1	2.1E-05	13	28.70	4	153
EphA2_TM	Ephrin type-A receptor 2 transmembrane domain	0.054	4	28.90	6	49
DUF2561	Protein of unknown function (DUF2561)	4.3E-05	14	20.50	7	70
SpoIIIAH	SpoIIIAH-like protein	2.7E-06	17	30.60	8	159
MAP17	Membrane-associated protein 117 kDa, PDZK1-interacting protein 1	0.0016	9	29.10	11	83
HTH_PafC	PafC helix-turn-helix domain	1	-1	32.00	23	45
Neur_chan_memb	Neurotransmitter-gated ion-channel transmembrane region	0.00039	10	23.10	25	155
RNA_polI_A34	DNA-directed RNA polymerase I subunit RPA34.5	0.0035	7	21.40	37	152
SR-25	Nuclear RNA-splicing-associated protein	0.056	3	55.00	46	154
FAM60A	Protein Family FAM60A	0.0073	6	27.00	82	167
DDRGK	DDRGK domain	0	178	23.30	94	275
FeoC	FeoC like transcriptional regulator	0.00062	10	20.90	189	231
HTH_PafC	PafC helix-turn-helix domain	1.6E-05	15	32.00	190	246
PCI	PCI domain	5.3E-05	14	22.50	192	244
HTH_AsnC-type	AsnC-type helix-turn-helix domain	0.00024	11	27.00	203	226
FeoC	FeoC like transcriptional regulator	0.0069	7	20.90	251	269