c2pfam

AT4G27390.1 :

Domain Description Evalue Bits GA Start End
DUF2614 Protein of unknown function (DUF2614) 1.2E-05 16 19.90 121 184
zf-LITAF-like LITAF-like zinc ribbon domain 0.00027 11 21.00 126 163
Zn_Tnp_IS1595 Transposase zinc-ribbon domain 0.0011 9 25.40 144 163
FYVE FYVE zinc finger 0.015 6 26.80 148 165
zinc_ribbon_9 zinc-ribbon 0.0044 7 30.80 150 161
zf-RING_4 RING/Ubox like zinc-binding domain 0.028 4 27.00 150 161
zf-ribbon_3 zinc-ribbon domain 0.00037 10 27.00 151 159
Prok-RING_1 Prokaryotic RING finger family 1 0.0013 9 29.10 151 181
YjdM_Zn_Ribbon PhnA Zinc-Ribbon 0.00018 12 30.80 152 179
zinc_ribbon_5 zinc-ribbon domain 0.0066 6 29.30 153 166
zf-TFIIB Transcription factor zinc-finger 0.00015 11 21.00 153 178
zinc_ribbon_2 zinc-ribbon domain 0.0053 7 25.00 154 160
zinc_ribbon_4 zinc-ribbon domain 0.0034 7 30.30 154 166
Zn-ribbon_8 Zinc ribbon domain 7.5E-07 19 34.40 154 180
TF_Zn_Ribbon TFIIB zinc-binding 6E-06 16 24.30 154 179
zf-RING_4 RING/Ubox like zinc-binding domain 0.0071 6 27.00 164 182
FYVE FYVE zinc finger 0.0023 8 26.80 168 186
zinc_ribbon_9 zinc-ribbon 0.0069 7 30.80 169 182
zf-ribbon_3 zinc-ribbon domain 0.037 4 27.00 169 178
zinc_ribbon_2 zinc-ribbon domain 0.022 5 25.00 169 179
Prok-RING_1 Prokaryotic RING finger family 1 0.018 5 29.10 172 187
Zn_Tnp_IS1595 Transposase zinc-ribbon domain 0.44 1 25.40 174 179
zf-LITAF-like LITAF-like zinc ribbon domain 0.66 0 21.00 174 180
zinc_ribbon_4 zinc-ribbon domain 0.03 4 30.30 175 195
zinc_ribbon_5 zinc-ribbon domain 0.011 6 29.30 175 191

235

DUF2614
zf-LITAF-like
Zn_Tnp_IS1595
FYVE
zinc_ribbon_9
zf-RING_4
zf-ribbon_3
Prok-RING_1
YjdM_Zn_Ribbon
zinc_ribbon_5
zf-TFIIB
zinc_ribbon_2
zinc_ribbon_4
Zn-ribbon_8
TF_Zn_Ribbon
zf-RING_4
FYVE
zinc_ribbon_9
zf-ribbon_3
zinc_ribbon_2
Prok-RING_1
Zn_Tnp_IS1595
zf-LITAF-like
zinc_ribbon_4
zinc_ribbon_5

References:

zf-LITAF-like
12527760 Structural classification of zinc fingers: survey and summary. Nucleic Acids Res. 2003;31:532-550.
17408970 Molecular cloning and characterization of a putative lipopolysaccharide-induced TNF-alpha factor (LITAF) gene homologue from Zhikong scallop Chlamys farreri. Fish Shellfish Immunol. 2007;23:419-429.
11731489 Novel protein domains and repeats in Drosophila melanogaster: insights into structure, function, and evolution. Genome Res 2001;11:1996-2008.

Zn-ribbon_8

FYVE
8798641 Endosomal localization of the autoantigen EEA1 is mediated by a zinc-binding FYVE finger. J Biol Chem 1996;271:24048-24054.
9697764 FYVE fingers bind PtdIns(3)P. Nature 1998;394:432-433.
10564636 FYVE-finger proteins - effectors of an inositol lipid. J Cell Sci 1999;112:4175-4183.

zf-TFIIB

zinc_ribbon_9

zinc_ribbon_5

zinc_ribbon_4

zinc_ribbon_2

zf-RING_4

TF_Zn_Ribbon
11045620 Structure of a (Cys3His) zinc ribbon, a ubiquitous motif in archaeal and eucaryal transcription. Protein Sci 2000;9:1743-1752.

DUF2614

Zn_Tnp_IS1595

Prok-RING_1

zf-ribbon_3

YjdM_Zn_Ribbon

Domain	Description	Evalue	Bits	GA	Start	End
DUF2614	Protein of unknown function (DUF2614)	1.2E-05	16	19.90	121	184
zf-LITAF-like	LITAF-like zinc ribbon domain	0.00027	11	21.00	126	163
Zn_Tnp_IS1595	Transposase zinc-ribbon domain	0.0011	9	25.40	144	163
FYVE	FYVE zinc finger	0.015	6	26.80	148	165
zinc_ribbon_9	zinc-ribbon	0.0044	7	30.80	150	161
zf-RING_4	RING/Ubox like zinc-binding domain	0.028	4	27.00	150	161
zf-ribbon_3	zinc-ribbon domain	0.00037	10	27.00	151	159
Prok-RING_1	Prokaryotic RING finger family 1	0.0013	9	29.10	151	181
YjdM_Zn_Ribbon	PhnA Zinc-Ribbon	0.00018	12	30.80	152	179
zinc_ribbon_5	zinc-ribbon domain	0.0066	6	29.30	153	166
zf-TFIIB	Transcription factor zinc-finger	0.00015	11	21.00	153	178
zinc_ribbon_2	zinc-ribbon domain	0.0053	7	25.00	154	160
zinc_ribbon_4	zinc-ribbon domain	0.0034	7	30.30	154	166
Zn-ribbon_8	Zinc ribbon domain	7.5E-07	19	34.40	154	180
TF_Zn_Ribbon	TFIIB zinc-binding	6E-06	16	24.30	154	179
zf-RING_4	RING/Ubox like zinc-binding domain	0.0071	6	27.00	164	182
FYVE	FYVE zinc finger	0.0023	8	26.80	168	186
zinc_ribbon_9	zinc-ribbon	0.0069	7	30.80	169	182
zf-ribbon_3	zinc-ribbon domain	0.037	4	27.00	169	178
zinc_ribbon_2	zinc-ribbon domain	0.022	5	25.00	169	179
Prok-RING_1	Prokaryotic RING finger family 1	0.018	5	29.10	172	187
Zn_Tnp_IS1595	Transposase zinc-ribbon domain	0.44	1	25.40	174	179
zf-LITAF-like	LITAF-like zinc ribbon domain	0.66	0	21.00	174	180
zinc_ribbon_4	zinc-ribbon domain	0.03	4	30.30	175	195
zinc_ribbon_5	zinc-ribbon domain	0.011	6	29.30	175	191