c2pfam

AT1G20780.1 :

Domain Description Evalue Bits GA Start End
zf-NOSIP Zinc-finger of nitric oxide synthase-interacting protein 0.00023 12 30.00 21 55
U-box U-box domain 6.6E-18 55 21.40 25 98
zf-Nse Zinc-finger of the MIZ type in Nse subunit 4.9E-06 17 20.70 28 70
Proteasom_PSMB Proteasome non-ATPase 26S subunit 0.00098 8 19.40 114 181
V-ATPase_H_C V-ATPase subunit H 2.5E-05 15 20.80 122 172
HEAT_2 HEAT repeats 0.00073 10 27.70 127 207
Arm_2 Armadillo-like 0.0073 6 20.40 136 181
Adaptin_N Adaptin N terminal region 5.6E-06 15 20.30 136 342
Cnd1 non-SMC mitotic condensation complex subunit 1 0.029 5 26.40 138 218
Arm Armadillo/beta-catenin-like repeat 0.41 1 20.60 140 168
MMS19_C RNAPII transcription regulator C-terminal 0.00014 11 32.90 143 193
HEAT_EZ HEAT-like repeat 0.14 3 27.00 144 169
DUF3361 Domain of unknown function (DUF3361) 0.0013 9 27.20 144 211
HEAT HEAT repeat 0.00013 13 23.50 145 173
RasGEF_N_2 Rapamycin-insensitive companion of mTOR RasGEF_N domain 0.047 4 27.00 146 183
RTTN_N Rotatin, an armadillo repeat protein, centriole functioning 7.5E-05 14 25.00 160 240
CTNNBL Catenin-beta-like, Arm-motif containing nuclear 0.2 2 20.90 164 198
Arm_2 Armadillo-like 0.06 3 20.40 180 320
HEAT_2 HEAT repeats 0.21 2 27.70 186 216
Arm Armadillo/beta-catenin-like repeat 0.017 6 20.60 187 214
Arm Armadillo/beta-catenin-like repeat 0.39 1 20.60 227 256
RasGEF_N_2 Rapamycin-insensitive companion of mTOR RasGEF_N domain 0.68 1 27.00 240 269
HEAT_2 HEAT repeats 0.0067 7 27.70 311 348
HEAT HEAT repeat 0.00091 10 23.50 316 340
Arm Armadillo/beta-catenin-like repeat 0.17 2 20.60 316 339
HEAT_EZ HEAT-like repeat 0.13 3 27.00 326 338
Arm Armadillo/beta-catenin-like repeat 0.084 3 20.60 347 384
DUF3361 Domain of unknown function (DUF3361) 0.0032 8 27.20 370 427
Arm_2 Armadillo-like 7.3E-05 12 20.40 382 480
Adaptin_N Adaptin N terminal region 0.023 3 20.30 399 475
HEAT_2 HEAT repeats 0.76 1 27.70 405 469
HEAT_2 HEAT repeats 0.62 1 27.70 442 468
Adaptin_N Adaptin N terminal region 0.084 1 20.30 586 698
Arm Armadillo/beta-catenin-like repeat 0.024 5 20.60 592 618
Cnd1 non-SMC mitotic condensation complex subunit 1 0.00026 11 26.40 662 705
CTNNBL Catenin-beta-like, Arm-motif containing nuclear 0.00039 11 20.90 668 692
Arm Armadillo/beta-catenin-like repeat 4E-08 23 20.60 672 699
HEAT_2 HEAT repeats 0.0045 8 27.70 673 699
V-ATPase_H_C V-ATPase subunit H 0.034 5 20.80 673 700
HEAT_EZ HEAT-like repeat 0.0054 8 27.00 673 699
Adaptin_N Adaptin N terminal region 0.11 1 20.30 674 702
DUF3361 Domain of unknown function (DUF3361) 0.6 0 27.20 674 703
RasGEF_N_2 Rapamycin-insensitive companion of mTOR RasGEF_N domain 0.066 4 27.00 674 710
HEAT HEAT repeat 0.0014 9 23.50 677 701
Arm Armadillo/beta-catenin-like repeat 0.43 1 20.60 715 740
Proteasom_PSMB Proteasome non-ATPase 26S subunit 0.037 3 19.40 719 787
HEAT_2 HEAT repeats 0.37 2 27.70 757 787

801

zf-NOSIP
U-box
zf-Nse
Proteasom_PSMB
V-ATPase_H_C
HEAT_2
Arm_2
Adaptin_N
Cnd1
Arm
MMS19_C
HEAT_EZ
DUF3361
HEAT
RasGEF_N_2
RTTN_N
CTNNBL
Arm_2
HEAT_2
Arm
Arm
RasGEF_N_2
HEAT_2
HEAT
Arm
HEAT_EZ
Arm
DUF3361
Arm_2
Adaptin_N
HEAT_2
HEAT_2
Adaptin_N
Arm
Cnd1
CTNNBL
Arm
HEAT_2
V-ATPase_H_C
HEAT_EZ
Adaptin_N
DUF3361
RasGEF_N_2
HEAT
Arm
Proteasom_PSMB
HEAT_2

References:

V-ATPase_H_C
10954728 Regulation of yeast ectoapyrase ynd1p activity by activator subunit Vma13p of vacuolar H+-ATPase. J Biol Chem 2000;275:35592-35599.
18708638 Functional characterization of the N-terminal domain of subunit H (Vma13p) of the yeast vacuolar ATPase. J Biol Chem. 2008; [Epub ahead of print]
16141210 Structural and functional separation of the N- and C-terminal domains of the yeast V-ATPase subunit H. J Biol Chem. 2005;280:36978-36985.

Arm_2

RasGEF_N_2

Arm
9298899 Three-dimensional structure of the armadillo repeat region of beta-catenin. Cell 1997;90:871-882.
8573337 Signal transduction of beta-catenin. Curr Opin Cell Biol 1995;7:634-640.
9309175 Armadillo and dTCF: a marriage made in the nucleus. Curr Opin Genet Dev 1997;7:459-466.
8259519 Association of the APC tumor suppressor protein with catenins. Science 1993;262:1734-1737.
8259518 Association of the APC gene product with beta-catenin. Science 1993;262:1731-1734.
2261639 The segment polarity gene armadillo encodes a functionally modular protein that is the Drosophila homolog of human plakoglobin. Cell 1990;63:1167-1176.

Adaptin_N
9261055 Linking cargo to vesicle formation: receptor tail interactions with coat proteins. Curr Opin Cell Biol 1997;9:488-495.
2495531 Structural and functional division into two domains of the large (100- to 115-kDa)chains of the clathrin-associated protein complex AP-2. Proc Natl Acad Sci U S A 1989;86:2612-2616.

DUF3361

HEAT
7550332 HEAT repeats in the Huntington's disease protein. Nat Genet 1995;11:115-116.
9989501 The structure of the protein phosphatase 2A PR65/A subunit reveals the conformation of its 15 tandemly repeated HEAT motifs. Cell 1999;96:99-110.

U-box
10704423 The U box is a modified RING finger - a common domain in ubiquitination. Curr Biol 2000;10:132-134.

HEAT_EZ

Cnd1

Proteasom_PSMB
16723119 Induction of 26S proteasome subunit PSMB5 by the bifunctional inducer 3-methylcholanthrene through the Nrf2-ARE, but not the AhR/Arnt-XRE, pathway. Biochem Biophys Res Commun. 2006;345:1350-1357.

RTTN_N

MMS19_C

CTNNBL

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

zf-NOSIP

HEAT_2

Domain	Description	Evalue	Bits	GA	Start	End
zf-NOSIP	Zinc-finger of nitric oxide synthase-interacting protein	0.00023	12	30.00	21	55
U-box	U-box domain	6.6E-18	55	21.40	25	98
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	4.9E-06	17	20.70	28	70
Proteasom_PSMB	Proteasome non-ATPase 26S subunit	0.00098	8	19.40	114	181
V-ATPase_H_C	V-ATPase subunit H	2.5E-05	15	20.80	122	172
HEAT_2	HEAT repeats	0.00073	10	27.70	127	207
Arm_2	Armadillo-like	0.0073	6	20.40	136	181
Adaptin_N	Adaptin N terminal region	5.6E-06	15	20.30	136	342
Cnd1	non-SMC mitotic condensation complex subunit 1	0.029	5	26.40	138	218
Arm	Armadillo/beta-catenin-like repeat	0.41	1	20.60	140	168
MMS19_C	RNAPII transcription regulator C-terminal	0.00014	11	32.90	143	193
HEAT_EZ	HEAT-like repeat	0.14	3	27.00	144	169
DUF3361	Domain of unknown function (DUF3361)	0.0013	9	27.20	144	211
HEAT	HEAT repeat	0.00013	13	23.50	145	173
RasGEF_N_2	Rapamycin-insensitive companion of mTOR RasGEF_N domain	0.047	4	27.00	146	183
RTTN_N	Rotatin, an armadillo repeat protein, centriole functioning	7.5E-05	14	25.00	160	240
CTNNBL	Catenin-beta-like, Arm-motif containing nuclear	0.2	2	20.90	164	198
Arm_2	Armadillo-like	0.06	3	20.40	180	320
HEAT_2	HEAT repeats	0.21	2	27.70	186	216
Arm	Armadillo/beta-catenin-like repeat	0.017	6	20.60	187	214
Arm	Armadillo/beta-catenin-like repeat	0.39	1	20.60	227	256
RasGEF_N_2	Rapamycin-insensitive companion of mTOR RasGEF_N domain	0.68	1	27.00	240	269
HEAT_2	HEAT repeats	0.0067	7	27.70	311	348
HEAT	HEAT repeat	0.00091	10	23.50	316	340
Arm	Armadillo/beta-catenin-like repeat	0.17	2	20.60	316	339
HEAT_EZ	HEAT-like repeat	0.13	3	27.00	326	338
Arm	Armadillo/beta-catenin-like repeat	0.084	3	20.60	347	384
DUF3361	Domain of unknown function (DUF3361)	0.0032	8	27.20	370	427
Arm_2	Armadillo-like	7.3E-05	12	20.40	382	480
Adaptin_N	Adaptin N terminal region	0.023	3	20.30	399	475
HEAT_2	HEAT repeats	0.76	1	27.70	405	469
HEAT_2	HEAT repeats	0.62	1	27.70	442	468
Adaptin_N	Adaptin N terminal region	0.084	1	20.30	586	698
Arm	Armadillo/beta-catenin-like repeat	0.024	5	20.60	592	618
Cnd1	non-SMC mitotic condensation complex subunit 1	0.00026	11	26.40	662	705
CTNNBL	Catenin-beta-like, Arm-motif containing nuclear	0.00039	11	20.90	668	692
Arm	Armadillo/beta-catenin-like repeat	4E-08	23	20.60	672	699
HEAT_2	HEAT repeats	0.0045	8	27.70	673	699
V-ATPase_H_C	V-ATPase subunit H	0.034	5	20.80	673	700
HEAT_EZ	HEAT-like repeat	0.0054	8	27.00	673	699
Adaptin_N	Adaptin N terminal region	0.11	1	20.30	674	702
DUF3361	Domain of unknown function (DUF3361)	0.6	0	27.20	674	703
RasGEF_N_2	Rapamycin-insensitive companion of mTOR RasGEF_N domain	0.066	4	27.00	674	710
HEAT	HEAT repeat	0.0014	9	23.50	677	701
Arm	Armadillo/beta-catenin-like repeat	0.43	1	20.60	715	740
Proteasom_PSMB	Proteasome non-ATPase 26S subunit	0.037	3	19.40	719	787
HEAT_2	HEAT repeats	0.37	2	27.70	757	787