c2pfam

AT4G28010.1 :

Domain Description Evalue Bits GA Start End
Clathrin Region in Clathrin and VPS 0.49 0 23.60 18 40
PPR_long Pentacotripeptide-repeat region of PRORP 1.9E-06 17 27.00 24 150
PPR_2 PPR repeat family 0.00051 10 30.00 76 114
PPR PPR repeat 0.0027 8 25.00 76 100
PPR_3 Pentatricopeptide repeat domain 0.00048 10 25.00 102 150
PPR PPR repeat 0.0037 8 25.00 108 138
PPR_2 PPR repeat family 3E-07 21 30.00 113 154
PPR_1 PPR repeat 1E-07 22 23.80 137 169
PPR_2 PPR repeat family 1.4E-14 44 30.00 141 188
PPR PPR repeat 5E-07 20 25.00 146 171
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.019 5 26.10 157 190
PPR_long Pentacotripeptide-repeat region of PRORP 1.6E-07 21 27.00 160 236
PPR_3 Pentatricopeptide repeat domain 6.6E-11 32 25.00 163 223
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.013 4 25.90 166 232
ATP13 Mitochondrial ATPase expression 0.073 3 26.70 170 203
PPR_1 PPR repeat 5.8E-12 35 23.80 173 204
PPR_2 PPR repeat family 2.8E-17 53 30.00 175 224
PPR PPR repeat 8.9E-10 29 25.00 178 208
PPR_1 PPR repeat 6.4E-14 42 23.80 207 239
PPR_2 PPR repeat family 7.1E-16 48 30.00 212 259
PPR PPR repeat 3.8E-12 36 25.00 213 242
TPR_19 Tetratricopeptide repeat 0.13 3 25.00 217 237
RPN7 26S proteasome subunit RPN7 0.13 2 25.30 218 250
TPR_19 Tetratricopeptide repeat 0.53 1 25.00 225 273
PPR_long Pentacotripeptide-repeat region of PRORP 7.1E-08 22 27.00 226 358
PPR_3 Pentatricopeptide repeat domain 1.4E-09 28 25.00 235 290
PPR_1 PPR repeat 1.2E-10 31 23.80 241 272
PPR_2 PPR repeat family 2.1E-10 31 30.00 246 291
PPR PPR repeat 2.7E-08 24 25.00 248 277
PPR_3 Pentatricopeptide repeat domain 1.5E-10 31 25.00 269 320
RPN7 26S proteasome subunit RPN7 0.28 1 25.30 276 311
PPR_2 PPR repeat family 2.4E-21 66 30.00 280 328
PPR_1 PPR repeat 8.7E-13 38 23.80 282 308
PPR PPR repeat 6.8E-13 38 25.00 283 313
AEP1 ATPase expression protein 1 0.019 4 27.00 283 321
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.0091 5 25.90 284 349
TPR_19 Tetratricopeptide repeat 0.54 1 25.00 292 305
TPR_8 Tetratricopeptide repeat 1 0 25.70 294 306
TPR_19 Tetratricopeptide repeat 0.092 3 25.00 296 349
PPR_3 Pentatricopeptide repeat domain 1.5E-14 44 25.00 304 360
PPR_1 PPR repeat 2.8E-13 40 23.80 311 343
PPR PPR repeat 2.1E-08 24 25.00 318 346
PPR_2 PPR repeat family 6.6E-14 42 30.00 323 364
Clathrin Region in Clathrin and VPS 1 -1 23.60 331 411
PPR_long Pentacotripeptide-repeat region of PRORP 8.5E-09 25 27.00 334 485
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.07 4 26.10 337 366
PPR_1 PPR repeat 4.2E-14 42 23.80 349 379
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.077 2 25.90 350 380
PPR_2 PPR repeat family 1.9E-19 60 30.00 350 398
PPR PPR repeat 1E-08 25 25.00 353 381
PPR_3 Pentatricopeptide repeat domain 1.3E-06 19 25.00 370 395
PPR_1 PPR repeat 8.2E-12 35 23.80 385 410
AEP1 ATPase expression protein 1 0.8 -1 27.00 387 436
PPR PPR repeat 9.3E-09 25 25.00 388 416
PPR_2 PPR repeat family 5E-07 20 30.00 388 415
TPR_19 Tetratricopeptide repeat 0.22 2 25.00 399 446
ATP13 Mitochondrial ATPase expression 0.0074 6 26.70 415 454
PPR_1 PPR repeat 1E-11 35 23.80 422 446
PPR_3 Pentatricopeptide repeat domain 0.00061 10 25.00 422 466
PPR_2 PPR repeat family 9.5E-10 29 30.00 422 450
PPR PPR repeat 3.8E-08 23 25.00 425 452
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.03 3 25.90 429 482
Clathrin Region in Clathrin and VPS 0.35 1 23.60 434 491
PPR_1 PPR repeat 0.00057 10 23.80 458 484
PPR_2 PPR repeat family 3.8E-13 40 30.00 458 506
PPR PPR repeat 5.8E-05 13 25.00 460 487
PPR_3 Pentatricopeptide repeat domain 0.025 5 25.00 460 501
MNE1 Mitochondrial splicing apparatus component 1 -1 22.70 461 491
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.068 4 26.10 466 509
TPR_19 Tetratricopeptide repeat 1 0 25.00 470 487
PPR_long Pentacotripeptide-repeat region of PRORP 3.8E-07 20 27.00 472 556
PPR_1 PPR repeat 4.3E-10 29 23.80 491 521
Clathrin Region in Clathrin and VPS 0.99 -1 23.60 491 526
PPR_3 Pentatricopeptide repeat domain 1.5E-06 18 25.00 492 538
PPR_2 PPR repeat family 7.1E-09 26 30.00 493 530
PPR PPR repeat 3E-09 27 25.00 496 522
PPR_1 PPR repeat 1.4E-13 40 23.80 525 556
PPR_2 PPR repeat family 3.2E-18 56 30.00 527 573
MNE1 Mitochondrial splicing apparatus component 0.0041 7 22.70 529 570
PPR PPR repeat 8.6E-10 29 25.00 532 559
TPR_19 Tetratricopeptide repeat 0.024 5 25.00 541 587
PPR_long Pentacotripeptide-repeat region of PRORP 1.9E-13 40 27.00 544 677
PPR_3 Pentatricopeptide repeat domain 4E-10 30 25.00 550 608
PPR_1 PPR repeat 3E-08 23 23.80 561 590
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.00076 8 25.90 561 586
PPR_2 PPR repeat family 2.5E-14 43 30.00 562 609
PPR PPR repeat 7.4E-07 19 25.00 565 595
TPR_19 Tetratricopeptide repeat 0.31 2 25.00 575 625
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.6 -1 25.90 592 621
PPR_1 PPR repeat 4.2E-10 29 23.80 594 626
PPR PPR repeat 9.9E-09 25 25.00 600 630
Clathrin Region in Clathrin and VPS 0.013 5 23.60 601 659
RPN7 26S proteasome subunit RPN7 0.0024 8 25.30 602 660
PPR_2 PPR repeat family 2E-08 24 30.00 602 635
AEP1 ATPase expression protein 1 0.039 3 27.00 603 679
TPR_8 Tetratricopeptide repeat 0.04 5 25.70 610 624
DUF3368 Domain of unknown function (DUF3368) 0.0073 6 27.30 610 630
PPR_3 Pentatricopeptide repeat domain 0.00047 10 25.00 622 660
PPR_2 PPR repeat family 0.082 3 30.00 632 670
MNE1 Mitochondrial splicing apparatus component 0.55 0 22.70 636 677
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.02 4 25.90 639 680
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.73 0 26.10 641 681

704

Clathrin
PPR_long
PPR_2
PPR
PPR_3
PPR
PPR_2
PPR_1
PPR_2
PPR
RPM2
PPR_long
PPR_3
MRP-S27
ATP13
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_19
RPN7
TPR_19
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_3
RPN7
PPR_2
PPR_1
PPR
AEP1
MRP-S27
TPR_19
TPR_8
TPR_19
PPR_3
PPR_1
PPR
PPR_2
Clathrin
PPR_long
RPM2
PPR_1
MRP-S27
PPR_2
PPR
PPR_3
PPR_1
AEP1
PPR
PPR_2
TPR_19
ATP13
PPR_1
PPR_3
PPR_2
PPR
MRP-S27
Clathrin
PPR_1
PPR_2
PPR
PPR_3
MNE1
RPM2
TPR_19
PPR_long
PPR_1
Clathrin
PPR_3
PPR_2
PPR
PPR_1
PPR_2
MNE1
PPR
TPR_19
PPR_long
PPR_3
PPR_1
MRP-S27
PPR_2
PPR
TPR_19
MRP-S27
PPR_1
PPR
Clathrin
RPN7
PPR_2
AEP1
TPR_8
DUF3368
PPR_3
PPR_2
MNE1
MRP-S27
RPM2

References:

AEP1

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_19

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

RPM2
1409716 A 105-kDa protein is required for yeast mitochondrial RNase P activity. Proc Natl Acad Sci U S A. 1992;89:9875-9879.
16024791 Rpm2p, a component of yeast mitochondrial RNase P, acts as a transcriptional activator in the nucleus. Mol Cell Biol. 2005;25:6546-6558.

ATP13

MNE1

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

DUF3368

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
Clathrin	Region in Clathrin and VPS	0.49	0	23.60	18	40
PPR_long	Pentacotripeptide-repeat region of PRORP	1.9E-06	17	27.00	24	150
PPR_2	PPR repeat family	0.00051	10	30.00	76	114
PPR	PPR repeat	0.0027	8	25.00	76	100
PPR_3	Pentatricopeptide repeat domain	0.00048	10	25.00	102	150
PPR	PPR repeat	0.0037	8	25.00	108	138
PPR_2	PPR repeat family	3E-07	21	30.00	113	154
PPR_1	PPR repeat	1E-07	22	23.80	137	169
PPR_2	PPR repeat family	1.4E-14	44	30.00	141	188
PPR	PPR repeat	5E-07	20	25.00	146	171
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.019	5	26.10	157	190
PPR_long	Pentacotripeptide-repeat region of PRORP	1.6E-07	21	27.00	160	236
PPR_3	Pentatricopeptide repeat domain	6.6E-11	32	25.00	163	223
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.013	4	25.90	166	232
ATP13	Mitochondrial ATPase expression	0.073	3	26.70	170	203
PPR_1	PPR repeat	5.8E-12	35	23.80	173	204
PPR_2	PPR repeat family	2.8E-17	53	30.00	175	224
PPR	PPR repeat	8.9E-10	29	25.00	178	208
PPR_1	PPR repeat	6.4E-14	42	23.80	207	239
PPR_2	PPR repeat family	7.1E-16	48	30.00	212	259
PPR	PPR repeat	3.8E-12	36	25.00	213	242
TPR_19	Tetratricopeptide repeat	0.13	3	25.00	217	237
RPN7	26S proteasome subunit RPN7	0.13	2	25.30	218	250
TPR_19	Tetratricopeptide repeat	0.53	1	25.00	225	273
PPR_long	Pentacotripeptide-repeat region of PRORP	7.1E-08	22	27.00	226	358
PPR_3	Pentatricopeptide repeat domain	1.4E-09	28	25.00	235	290
PPR_1	PPR repeat	1.2E-10	31	23.80	241	272
PPR_2	PPR repeat family	2.1E-10	31	30.00	246	291
PPR	PPR repeat	2.7E-08	24	25.00	248	277
PPR_3	Pentatricopeptide repeat domain	1.5E-10	31	25.00	269	320
RPN7	26S proteasome subunit RPN7	0.28	1	25.30	276	311
PPR_2	PPR repeat family	2.4E-21	66	30.00	280	328
PPR_1	PPR repeat	8.7E-13	38	23.80	282	308
PPR	PPR repeat	6.8E-13	38	25.00	283	313
AEP1	ATPase expression protein 1	0.019	4	27.00	283	321
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.0091	5	25.90	284	349
TPR_19	Tetratricopeptide repeat	0.54	1	25.00	292	305
TPR_8	Tetratricopeptide repeat	1	0	25.70	294	306
TPR_19	Tetratricopeptide repeat	0.092	3	25.00	296	349
PPR_3	Pentatricopeptide repeat domain	1.5E-14	44	25.00	304	360
PPR_1	PPR repeat	2.8E-13	40	23.80	311	343
PPR	PPR repeat	2.1E-08	24	25.00	318	346
PPR_2	PPR repeat family	6.6E-14	42	30.00	323	364
Clathrin	Region in Clathrin and VPS	1	-1	23.60	331	411
PPR_long	Pentacotripeptide-repeat region of PRORP	8.5E-09	25	27.00	334	485
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.07	4	26.10	337	366
PPR_1	PPR repeat	4.2E-14	42	23.80	349	379
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.077	2	25.90	350	380
PPR_2	PPR repeat family	1.9E-19	60	30.00	350	398
PPR	PPR repeat	1E-08	25	25.00	353	381
PPR_3	Pentatricopeptide repeat domain	1.3E-06	19	25.00	370	395
PPR_1	PPR repeat	8.2E-12	35	23.80	385	410
AEP1	ATPase expression protein 1	0.8	-1	27.00	387	436
PPR	PPR repeat	9.3E-09	25	25.00	388	416
PPR_2	PPR repeat family	5E-07	20	30.00	388	415
TPR_19	Tetratricopeptide repeat	0.22	2	25.00	399	446
ATP13	Mitochondrial ATPase expression	0.0074	6	26.70	415	454
PPR_1	PPR repeat	1E-11	35	23.80	422	446
PPR_3	Pentatricopeptide repeat domain	0.00061	10	25.00	422	466
PPR_2	PPR repeat family	9.5E-10	29	30.00	422	450
PPR	PPR repeat	3.8E-08	23	25.00	425	452
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.03	3	25.90	429	482
Clathrin	Region in Clathrin and VPS	0.35	1	23.60	434	491
PPR_1	PPR repeat	0.00057	10	23.80	458	484
PPR_2	PPR repeat family	3.8E-13	40	30.00	458	506
PPR	PPR repeat	5.8E-05	13	25.00	460	487
PPR_3	Pentatricopeptide repeat domain	0.025	5	25.00	460	501
MNE1	Mitochondrial splicing apparatus component	1	-1	22.70	461	491
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.068	4	26.10	466	509
TPR_19	Tetratricopeptide repeat	1	0	25.00	470	487
PPR_long	Pentacotripeptide-repeat region of PRORP	3.8E-07	20	27.00	472	556
PPR_1	PPR repeat	4.3E-10	29	23.80	491	521
Clathrin	Region in Clathrin and VPS	0.99	-1	23.60	491	526
PPR_3	Pentatricopeptide repeat domain	1.5E-06	18	25.00	492	538
PPR_2	PPR repeat family	7.1E-09	26	30.00	493	530
PPR	PPR repeat	3E-09	27	25.00	496	522
PPR_1	PPR repeat	1.4E-13	40	23.80	525	556
PPR_2	PPR repeat family	3.2E-18	56	30.00	527	573
MNE1	Mitochondrial splicing apparatus component	0.0041	7	22.70	529	570
PPR	PPR repeat	8.6E-10	29	25.00	532	559
TPR_19	Tetratricopeptide repeat	0.024	5	25.00	541	587
PPR_long	Pentacotripeptide-repeat region of PRORP	1.9E-13	40	27.00	544	677
PPR_3	Pentatricopeptide repeat domain	4E-10	30	25.00	550	608
PPR_1	PPR repeat	3E-08	23	23.80	561	590
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.00076	8	25.90	561	586
PPR_2	PPR repeat family	2.5E-14	43	30.00	562	609
PPR	PPR repeat	7.4E-07	19	25.00	565	595
TPR_19	Tetratricopeptide repeat	0.31	2	25.00	575	625
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.6	-1	25.90	592	621
PPR_1	PPR repeat	4.2E-10	29	23.80	594	626
PPR	PPR repeat	9.9E-09	25	25.00	600	630
Clathrin	Region in Clathrin and VPS	0.013	5	23.60	601	659
RPN7	26S proteasome subunit RPN7	0.0024	8	25.30	602	660
PPR_2	PPR repeat family	2E-08	24	30.00	602	635
AEP1	ATPase expression protein 1	0.039	3	27.00	603	679
TPR_8	Tetratricopeptide repeat	0.04	5	25.70	610	624
DUF3368	Domain of unknown function (DUF3368)	0.0073	6	27.30	610	630
PPR_3	Pentatricopeptide repeat domain	0.00047	10	25.00	622	660
PPR_2	PPR repeat family	0.082	3	30.00	632	670
MNE1	Mitochondrial splicing apparatus component	0.55	0	22.70	636	677
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.02	4	25.90	639	680
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.73	0	26.10	641	681