c2pfam

AT4G28080.1 :

Domain Description Evalue Bits GA Start End
CLU_N Mitochondrial function, CLU-N-term 7.4E-14 42 25.00 48 118
CLU Clustered mitochondria 6.9E-08 22 24.00 351 487
eIF3_p135 Translation initiation factor eIF3 subunit 135 6.5E-25 78 22.00 724 863
TPR_MalT MalT-like TPR region 4.1E-05 13 27.00 895 1007
TPR_2 Tetratricopeptide repeat 0.3 1 22.40 903 920
TPR_10 Tetratricopeptide repeat 0.038 4 27.50 905 931
TPR_12 Tetratricopeptide repeat 3.4E-09 27 30.10 905 963
TPR_12 Tetratricopeptide repeat 2E-16 50 30.10 933 1003
TPR_10 Tetratricopeptide repeat 3E-11 33 27.50 933 974
TPR_2 Tetratricopeptide repeat 1.3E-05 15 22.40 935 965
TPR_8 Tetratricopeptide repeat 0.00012 12 25.70 935 965
TPR_1 Tetratricopeptide repeat 0.00074 9 20.40 936 965
TPR_10 Tetratricopeptide repeat 0.0019 8 27.50 975 1015
TPR_8 Tetratricopeptide repeat 0.011 6 25.70 977 1005
TPR_1 Tetratricopeptide repeat 0.0037 7 20.40 978 1005
TPR_2 Tetratricopeptide repeat 0.003 8 22.40 979 1005
TPR_9 Tetratricopeptide repeat 1.8E-05 15 35.00 986 1046
TPR_MalT MalT-like TPR region 0.066 2 27.00 994 1070
TPR_12 Tetratricopeptide repeat 3.9E-14 43 30.10 1017 1091
TPR_10 Tetratricopeptide repeat 3E-08 23 27.50 1017 1057
TPR_2 Tetratricopeptide repeat 0.19 2 22.40 1019 1048
DUF3718 Protein of unknown function (DUF3718) 8.2E-05 13 21.60 1026 1069
TPR_10 Tetratricopeptide repeat 0.00048 10 27.50 1059 1097
PAM2 Ataxin-2 C-terminal region 0.46 0 20.00 1564 1577
PAM2 Ataxin-2 C-terminal region 0.001 9 20.00 1671 1680

1819

CLU_N
CLU
eIF3_p135
TPR_MalT
TPR_2
TPR_10
TPR_12
TPR_12
TPR_10
TPR_2
TPR_8
TPR_1
TPR_10
TPR_8
TPR_1
TPR_2
TPR_9
TPR_MalT
TPR_12
TPR_10
TPR_2
DUF3718
TPR_10
PAM2
PAM2

References:

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

PAM2
15003521 Survey on the PABC recognition motif PAM2. Biochem Biophys Res Commun 2004;316:129-138.

CLU_N

TPR_12

TPR_10

DUF3718

eIF3_p135

CLU

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_MalT

TPR_9

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
CLU_N	Mitochondrial function, CLU-N-term	7.4E-14	42	25.00	48	118
CLU	Clustered mitochondria	6.9E-08	22	24.00	351	487
eIF3_p135	Translation initiation factor eIF3 subunit 135	6.5E-25	78	22.00	724	863
TPR_MalT	MalT-like TPR region	4.1E-05	13	27.00	895	1007
TPR_2	Tetratricopeptide repeat	0.3	1	22.40	903	920
TPR_10	Tetratricopeptide repeat	0.038	4	27.50	905	931
TPR_12	Tetratricopeptide repeat	3.4E-09	27	30.10	905	963
TPR_12	Tetratricopeptide repeat	2E-16	50	30.10	933	1003
TPR_10	Tetratricopeptide repeat	3E-11	33	27.50	933	974
TPR_2	Tetratricopeptide repeat	1.3E-05	15	22.40	935	965
TPR_8	Tetratricopeptide repeat	0.00012	12	25.70	935	965
TPR_1	Tetratricopeptide repeat	0.00074	9	20.40	936	965
TPR_10	Tetratricopeptide repeat	0.0019	8	27.50	975	1015
TPR_8	Tetratricopeptide repeat	0.011	6	25.70	977	1005
TPR_1	Tetratricopeptide repeat	0.0037	7	20.40	978	1005
TPR_2	Tetratricopeptide repeat	0.003	8	22.40	979	1005
TPR_9	Tetratricopeptide repeat	1.8E-05	15	35.00	986	1046
TPR_MalT	MalT-like TPR region	0.066	2	27.00	994	1070
TPR_12	Tetratricopeptide repeat	3.9E-14	43	30.10	1017	1091
TPR_10	Tetratricopeptide repeat	3E-08	23	27.50	1017	1057
TPR_2	Tetratricopeptide repeat	0.19	2	22.40	1019	1048
DUF3718	Protein of unknown function (DUF3718)	8.2E-05	13	21.60	1026	1069
TPR_10	Tetratricopeptide repeat	0.00048	10	27.50	1059	1097
PAM2	Ataxin-2 C-terminal region	0.46	0	20.00	1564	1577
PAM2	Ataxin-2 C-terminal region	0.001	9	20.00	1671	1680