c2pfam

AT1G20823.1 :

Domain Description Evalue Bits GA Start End
Prok-RING_4 Prokaryotic RING finger family 4 0.1 3 27.00 105 121
FANCL_C FANCL C-terminal domain 2E-06 18 20.70 109 155
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 4.2E-06 17 27.30 109 151
Prok-RING_1 Prokaryotic RING finger family 1 5.3E-07 20 29.10 109 139
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 4.4E-07 20 27.00 110 154
zf-RING_2 Ring finger domain 4.9E-18 56 27.30 110 153
zf-RING_11 RING-like zinc finger 6.1E-15 45 27.00 110 139
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 3.3E-13 40 27.00 110 152
zf-RING_5 zinc-RING finger domain 1.2E-08 25 27.90 110 154
zf-RING_UBOX RING-type zinc-finger 2.5E-08 24 25.20 111 150
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 6.3E-10 29 21.00 111 152
zf-RING_4 RING/Ubox like zinc-binding domain 2E-05 15 27.00 111 154
Prok-RING_4 Prokaryotic RING finger family 4 0.00063 10 27.00 111 154
PHD PHD-finger 0.00046 10 27.90 111 153
UPF0547 Uncharacterised protein family UPF0547 0.17 2 27.10 113 134
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 7.2E-09 26 21.40 120 159
zf-rbx1 RING-H2 zinc finger domain 5.1E-10 30 31.00 123 153
zf-RING-like RING-like domain 5.9E-05 14 21.60 129 152
Prok-RING_1 Prokaryotic RING finger family 1 0.18 2 29.10 147 165
UPF0547 Uncharacterised protein family UPF0547 0.0044 7 27.10 149 165

197

Prok-RING_4
FANCL_C
Zn_ribbon_17
Prok-RING_1
zf-C3HC4_3
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-RING_5
zf-RING_UBOX
zf-C3HC4
zf-RING_4
Prok-RING_4
PHD
UPF0547
zf-ANAPC11
zf-rbx1
zf-RING-like
Prok-RING_1
UPF0547

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

zf-C3HC4_2

Zn_ribbon_17

zf-ANAPC11

zf-RING_UBOX

zf-rbx1

zf-RING_5

zf-RING_4

zf-RING_2

UPF0547

zf-RING-like

zf-RING_11

zf-C3HC4_3

Prok-RING_4

Prok-RING_1

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
Prok-RING_4	Prokaryotic RING finger family 4	0.1	3	27.00	105	121
FANCL_C	FANCL C-terminal domain	2E-06	18	20.70	109	155
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	4.2E-06	17	27.30	109	151
Prok-RING_1	Prokaryotic RING finger family 1	5.3E-07	20	29.10	109	139
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	4.4E-07	20	27.00	110	154
zf-RING_2	Ring finger domain	4.9E-18	56	27.30	110	153
zf-RING_11	RING-like zinc finger	6.1E-15	45	27.00	110	139
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	3.3E-13	40	27.00	110	152
zf-RING_5	zinc-RING finger domain	1.2E-08	25	27.90	110	154
zf-RING_UBOX	RING-type zinc-finger	2.5E-08	24	25.20	111	150
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	6.3E-10	29	21.00	111	152
zf-RING_4	RING/Ubox like zinc-binding domain	2E-05	15	27.00	111	154
Prok-RING_4	Prokaryotic RING finger family 4	0.00063	10	27.00	111	154
PHD	PHD-finger	0.00046	10	27.90	111	153
UPF0547	Uncharacterised protein family UPF0547	0.17	2	27.10	113	134
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	7.2E-09	26	21.40	120	159
zf-rbx1	RING-H2 zinc finger domain	5.1E-10	30	31.00	123	153
zf-RING-like	RING-like domain	5.9E-05	14	21.60	129	152
Prok-RING_1	Prokaryotic RING finger family 1	0.18	2	29.10	147	165
UPF0547	Uncharacterised protein family UPF0547	0.0044	7	27.10	149	165