c2pfam

AT4G28830.1 :

Domain Description Evalue Bits GA Start End
PrmA Ribosomal protein L11 methyltransferase (PrmA) 4.6E-15 46 20.10 28 121
Cons_hypoth95 Conserved hypothetical protein 95 4.7E-07 20 20.30 42 160
MTS Methyltransferase small domain 5.3E-17 52 21.20 44 139
Methyltransf_23 Methyltransferase domain 2E-05 15 27.00 46 103
Methyltransf_32 Methyltransferase domain 7.2E-07 19 27.00 48 107
Methyltransf_31 Methyltransferase domain 9.3E-17 51 27.00 49 145
Methyltransf_18 Methyltransferase domain 0.00011 12 27.00 49 120
N6_N4_Mtase DNA methylase 0.00022 11 23.20 49 87
Met_10 Met-10+ like-protein 2.6E-06 17 20.70 50 126
Methyltransf_15 RNA cap guanine-N2 methyltransferase 8.2E-09 25 21.30 51 153
Methyltransf_25 Methyltransferase domain 8.4E-15 45 27.00 52 129
Methyltransf_12 Methyltransferase domain 1.6E-07 22 30.00 54 121
Methyltransf_11 Methyltransferase domain 1.9E-11 35 21.20 54 121
adh_short short chain dehydrogenase 0.00019 11 20.50 57 111
UPF0020 Putative RNA methylase family UPF0020 4.3E-13 39 20.90 70 142
N6_N4_Mtase DNA methylase 0.064 3 23.20 115 132

208

PrmA
Cons_hypoth95
MTS
Methyltransf_23
Methyltransf_32
Methyltransf_31
Methyltransf_18
N6_N4_Mtase
Met_10
Methyltransf_15
Methyltransf_25
Methyltransf_12
Methyltransf_11
adh_short
UPF0020
N6_N4_Mtase

References:

adh_short
9735295 The refined crystal structure of Drosophila lebanonensis alcohol dehydrogenase at 1.9 A resolution. J Mol Biol 1998;282:383-399.
10387002 Structure of tropinone reductase-II complexed with NADP+ and pseudotropine at 1.9 A resolution: implication for stereospecific substrate binding and catalysis. Biochemistry 1999;38:7630-7637.

Met_10
7557397 Sequence of the met-10+ locus of Neurospora crassa: homology to a sequence of unknown function in Saccharomyces cerevisiae chromosome 8. Gene 1995;162:111-115.

Methyltransf_32

Methyltransf_31

PrmA
8226664 Cotranscription of two genes necessary for ribosomal protein L11 methylation (prmA) and pantothenate transport (panF) in Escherichia coli K-12. J Bacteriol 1993;175:7178-7188.

Cons_hypoth95

Methyltransf_25

Methyltransf_23

Methyltransf_18

Methyltransf_11

UPF0020
11295541 THUMP - a predicted RNA-binding domain shared by 4-thiouridine, pseudouridine synthases and RNA methylases. Trends Biochem Sci 2001;26:215-217.

Methyltransf_15
17284461 Biochemical and Genetic Analysis of RNA Cap Guanine-N2 Methyltransferases from Giardia lamblia and Schizosaccharomyces pombe. Nucleic Acids Res. 2007; [Epub ahead of print]

N6_N4_Mtase

MTS

Methyltransf_12

Domain	Description	Evalue	Bits	GA	Start	End
PrmA	Ribosomal protein L11 methyltransferase (PrmA)	4.6E-15	46	20.10	28	121
Cons_hypoth95	Conserved hypothetical protein 95	4.7E-07	20	20.30	42	160
MTS	Methyltransferase small domain	5.3E-17	52	21.20	44	139
Methyltransf_23	Methyltransferase domain	2E-05	15	27.00	46	103
Methyltransf_32	Methyltransferase domain	7.2E-07	19	27.00	48	107
Methyltransf_31	Methyltransferase domain	9.3E-17	51	27.00	49	145
Methyltransf_18	Methyltransferase domain	0.00011	12	27.00	49	120
N6_N4_Mtase	DNA methylase	0.00022	11	23.20	49	87
Met_10	Met-10+ like-protein	2.6E-06	17	20.70	50	126
Methyltransf_15	RNA cap guanine-N2 methyltransferase	8.2E-09	25	21.30	51	153
Methyltransf_25	Methyltransferase domain	8.4E-15	45	27.00	52	129
Methyltransf_12	Methyltransferase domain	1.6E-07	22	30.00	54	121
Methyltransf_11	Methyltransferase domain	1.9E-11	35	21.20	54	121
adh_short	short chain dehydrogenase	0.00019	11	20.50	57	111
UPF0020	Putative RNA methylase family UPF0020	4.3E-13	39	20.90	70	142
N6_N4_Mtase	DNA methylase	0.064	3	23.20	115	132