c2pfam

AT4G29060.1 :

Domain Description Evalue Bits GA Start End
S1 S1 RNA binding domain 3.7E-19 58 21.10 136 205
S1_2 S1 domain 0.064 3 21.80 136 170
RNase_II_C_S1 RNase II-type exonuclease C-terminal S1 domain 6.5E-06 15 26.60 182 203
S1 S1 RNA binding domain 1.4E-11 34 21.10 244 311
S1_2 S1 domain 0.0061 6 21.80 248 279
RNase_II_C_S1 RNase II-type exonuclease C-terminal S1 domain 0.026 4 26.60 291 314
HOIP-UBA HOIP UBA domain pair 0.0036 6 22.40 524 562
DPM3 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) 0.017 5 23.80 535 561
Pex14_N Peroxisomal membrane anchor protein (Pex14p) conserved region 0.013 5 24.60 553 565
EF_TS Elongation factor TS 2.1E-32 102 21.00 573 713
CemA CemA family 0.0035 6 20.80 587 672
HOIP-UBA HOIP UBA domain pair 0.0054 6 22.40 762 800
DPM3 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) 0.012 5 23.80 773 799
Pex14_N Peroxisomal membrane anchor protein (Pex14p) conserved region 0.00025 10 24.60 787 803
EF_TS Elongation factor TS 6.1E-33 103 21.00 811 951
CemA CemA family 0.014 4 20.80 824 906
DPM3 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) 0.14 2 23.80 863 889

953

S1
S1_2
RNase_II_C_S1
S1
S1_2
RNase_II_C_S1
HOIP-UBA
DPM3
Pex14_N
EF_TS
CemA
HOIP-UBA
DPM3
Pex14_N
EF_TS
CemA
DPM3

References:

RNase_II_C_S1

S1
9008164 The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold. Cell 1997;88:235-242.

CemA
8633006 cemA homologue essential to CO2 transport in the cyanobacterium Synechocystis PCC6803. Proc Natl Acad Sci U S A 1996;93:4006-4010.
2103453 An open reading frame encoding a putative haem-binding polypeptide is cotranscribed with the pea chloroplast gene for apocytochrome f. Plant Mol Biol 1990;15:347-356.

EF_TS

HOIP-UBA

S1_2

DPM3
10835346 Human dolichol-phosphate-mannose synthase consists of three subunits, DPM1, DPM2 and DPM3. EMBO J 2000;19:2475-2482.

Pex14_N
9094717 Pex14p, a peroxisomal membrane protein binding both receptors of the two PTS-dependent import pathways. Cell 1997;89:83-92.
11564741 Peroxisome biogenesis and selective degradation converge at Pex14p. J Biol Chem 2001;276:44570-44574.

Domain	Description	Evalue	Bits	GA	Start	End
S1	S1 RNA binding domain	3.7E-19	58	21.10	136	205
S1_2	S1 domain	0.064	3	21.80	136	170
RNase_II_C_S1	RNase II-type exonuclease C-terminal S1 domain	6.5E-06	15	26.60	182	203
S1	S1 RNA binding domain	1.4E-11	34	21.10	244	311
S1_2	S1 domain	0.0061	6	21.80	248	279
RNase_II_C_S1	RNase II-type exonuclease C-terminal S1 domain	0.026	4	26.60	291	314
HOIP-UBA	HOIP UBA domain pair	0.0036	6	22.40	524	562
DPM3	Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)	0.017	5	23.80	535	561
Pex14_N	Peroxisomal membrane anchor protein (Pex14p) conserved region	0.013	5	24.60	553	565
EF_TS	Elongation factor TS	2.1E-32	102	21.00	573	713
CemA	CemA family	0.0035	6	20.80	587	672
HOIP-UBA	HOIP UBA domain pair	0.0054	6	22.40	762	800
DPM3	Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)	0.012	5	23.80	773	799
Pex14_N	Peroxisomal membrane anchor protein (Pex14p) conserved region	0.00025	10	24.60	787	803
EF_TS	Elongation factor TS	6.1E-33	103	21.00	811	951
CemA	CemA family	0.014	4	20.80	824	906
DPM3	Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)	0.14	2	23.80	863	889