c2pfam

AT4G30300.1 :

Domain Description Evalue Bits GA Start End
AAA_23 AAA domain 4.5E-05 15 27.00 16 40
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 2.9E-05 15 26.60 17 42
ABC_tran ABC transporter 5E-22 70 23.10 17 144
AAA_29 P-loop containing region of AAA domain 0.00063 10 27.00 18 37
ATPase_2 ATPase domain predominantly from Archaea 1.3E-06 19 33.20 19 125
RsgA_GTPase RsgA GTPase 3.5E-05 15 30.00 19 44
AAA_15 AAA ATPase domain 1.1E-06 19 32.10 20 151
AAA_22 AAA domain 6.2E-06 17 27.00 20 109
AAA_30 AAA domain 0.00057 10 27.00 20 41
Arf ADP-ribosylation factor family 0.00026 11 20.30 21 46
VirE Virulence-associated protein E 0.00011 12 21.50 21 46
SRP54 SRP54-type protein, GTPase domain 9.1E-05 13 20.50 21 41
AAA_24 AAA domain 1.7E-06 19 27.00 21 52
PduV-EutP Ethanolamine utilisation - propanediol utilisation 4.7E-05 14 20.50 21 74
NACHT NACHT domain 8.1E-06 17 20.40 22 94
SMC_N RecF/RecN/SMC N terminal domain 1.3E-08 25 40.00 22 160
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 1.8E-05 15 27.00 22 83
Septin Septin 2.4E-05 15 20.00 23 75
Roc Ras of Complex, Roc, domain of DAPkinase 4.7E-05 14 27.00 23 55
AAA_28 AAA domain 0.00017 13 27.00 23 69
MMR_HSR1 GTPase of unknown function 0.00029 12 24.50 23 70
RNA_helicase RNA helicase 0.00045 12 21.50 23 43
AAA_33 AAA domain 0.00039 11 27.00 23 41
AAA ATPase family associated with various cellular activities (AAA) 5.4E-05 14 20.80 24 57
AAA_13 AAA domain 0.00013 12 36.00 25 68
SbcCD_C Putative exonuclease SbcCD, C subunit 0.00041 12 27.00 106 131
AAA_13 AAA domain 0.48 0 36.00 114 163
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0037 8 27.00 116 162

181

AAA_23
TsaE
ABC_tran
AAA_29
ATPase_2
RsgA_GTPase
AAA_15
AAA_22
AAA_30
Arf
VirE
SRP54
AAA_24
PduV-EutP
NACHT
SMC_N
AAA_21
Septin
Roc
AAA_28
MMR_HSR1
RNA_helicase
AAA_33
AAA
AAA_13
SbcCD_C
AAA_13
AAA_21

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

RsgA_GTPase

SbcCD_C

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

PduV-EutP
15516577 Evidence that a B12-adenosyl transferase is encoded within the ethanolamine operon of Salmonella enterica. J Bacteriol. 2004;186:7635-7644.
10464203 The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins. J Bacteriol 1999;181:5317-5329.
10498708 The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation. J Bacteriol. 1999;181:5967-5975.

TsaE

Septin
12665577 Molecular dissection of a yeast septin: distinct domains are required for septin interaction, localization, and function. Mol Cell Biol 2003;23:2762-2777.
14611653 The septins. Genome Biol 2003;4:236.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

SRP54
9002525 Crystal structure of the NG domain from the signal-recognition particle receptor FtsY. Nature 1997;385:365-368.

VirE

ATPase_2

Arf
7990966 Structure of the human ADP-ribosylation factor 1 complexed with GDP. Nature 1994;372:704-708.
7759471 Structure and function of ARF proteins: Activators of cholera toxin and critical components of intracellular vesicular transport processes. J. Biol. Chem. 1995;270:12327-12330.
7770914 Arf proteins: the membrane traffic police? Trends Biochem Sci 1995;20:147-150.
1899243 Human ADP-ribosylation factors. A functionally conserved family of GTP-binding proteins. J Biol Chem 1991;266:2606-2614.

Roc

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_33

AAA_30

AAA_29

AAA_28

AAA_24

AAA_23

AAA_22

AAA_21

AAA_15

AAA_13

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

Domain	Description	Evalue	Bits	GA	Start	End
AAA_23	AAA domain	4.5E-05	15	27.00	16	40
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	2.9E-05	15	26.60	17	42
ABC_tran	ABC transporter	5E-22	70	23.10	17	144
AAA_29	P-loop containing region of AAA domain	0.00063	10	27.00	18	37
ATPase_2	ATPase domain predominantly from Archaea	1.3E-06	19	33.20	19	125
RsgA_GTPase	RsgA GTPase	3.5E-05	15	30.00	19	44
AAA_15	AAA ATPase domain	1.1E-06	19	32.10	20	151
AAA_22	AAA domain	6.2E-06	17	27.00	20	109
AAA_30	AAA domain	0.00057	10	27.00	20	41
Arf	ADP-ribosylation factor family	0.00026	11	20.30	21	46
VirE	Virulence-associated protein E	0.00011	12	21.50	21	46
SRP54	SRP54-type protein, GTPase domain	9.1E-05	13	20.50	21	41
AAA_24	AAA domain	1.7E-06	19	27.00	21	52
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	4.7E-05	14	20.50	21	74
NACHT	NACHT domain	8.1E-06	17	20.40	22	94
SMC_N	RecF/RecN/SMC N terminal domain	1.3E-08	25	40.00	22	160
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	1.8E-05	15	27.00	22	83
Septin	Septin	2.4E-05	15	20.00	23	75
Roc	Ras of Complex, Roc, domain of DAPkinase	4.7E-05	14	27.00	23	55
AAA_28	AAA domain	0.00017	13	27.00	23	69
MMR_HSR1	GTPase of unknown function	0.00029	12	24.50	23	70
RNA_helicase	RNA helicase	0.00045	12	21.50	23	43
AAA_33	AAA domain	0.00039	11	27.00	23	41
AAA	ATPase family associated with various cellular activities (AAA)	5.4E-05	14	20.80	24	57
AAA_13	AAA domain	0.00013	12	36.00	25	68
SbcCD_C	Putative exonuclease SbcCD, C subunit	0.00041	12	27.00	106	131
AAA_13	AAA domain	0.48	0	36.00	114	163
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0037	8	27.00	116	162