c2pfam

AT4G32200.1 :

Domain Description Evalue Bits GA Start End
HORMA HORMA domain 0 153 20.70 12 242
ADIP Afadin- and alpha -actinin-Binding 0.22 1 29.10 354 372
Prefoldin_2 Prefoldin subunit 0.77 -1 21.10 472 500
Ctr Ctr copper transporter family 1.9E-05 14 21.60 570 621
APG6_N Apg6 coiled-coil region 0.005 6 45.00 1165 1271
Prominin Prominin 0.00017 9 31.00 1191 1294
ADIP Afadin- and alpha -actinin-Binding 0.004 6 29.10 1200 1288
Prefoldin_2 Prefoldin subunit 0.00031 10 21.10 1208 1247
LPP Repeated sequence found in lipoprotein LPP 0.0002 11 21.00 1219 1263

1399

HORMA
ADIP
Prefoldin_2
Ctr
APG6_N
Prominin
ADIP
Prefoldin_2
LPP

References:

Prominin
11467842 Rat prominin, like its mouse and human orthologues, is a pentaspan membrane glycoprotein. Biochem Biophys Res Commun 2001;285:939-944.
10587575 A frameshift mutation in prominin (mouse)-like 1 causes human retinal degeneration. Hum Mol Genet 2000;9:27-34.

ADIP
12446711 ADIP, a novel Afadin- and alpha-actinin-binding protein localized at cell-cell adherens junctions. J Biol Chem. 2003;278:4103-4111.
17486116 Gamma-tubulin complex-mediated anchoring of spindle microtubules to spindle-pole bodies requires Msd1 in fission yeast. Nat Cell Biol. 2007;9:646-653.

Prefoldin_2
1748305 Primary structure of the embryo-expressed gene KE2 from the mouse H-2K region. Gene 1991;107:345-346.
7828874 YKE2, a yeast nuclear gene encoding a protein showing homology to mouse KE2 and containing a putative leucine-zipper motif. Gene 1994;151:197-201.
9463374 A novel protein complex promoting formation of functional alpha- and gamma-tubulin. EMBO J 1998;17:952-966.

Ctr
11983704 Biochemical and genetic analyses of yeast and human high-affinity copper transporters suggest a conserved mechanism for copper uptake. J Biol Chem 2002;0:0-0.

APG6_N

LPP

HORMA
9223296 The Schizosaccharomyces pombe spindle checkpoint protein mad2p blocks anaphase and genetically interacts with the anaphase-promoting complex. Proc Natl Acad Sci U S A 1997;94:7965-7970.
9757827 The HORMA domain: a common structural denominator in mitotic checkpoints, chromosome synapsis and DNA repair. Trends Biochem Sci 1998;23:284-286.

Domain	Description	Evalue	Bits	GA	Start	End
HORMA	HORMA domain	0	153	20.70	12	242
ADIP	Afadin- and alpha -actinin-Binding	0.22	1	29.10	354	372
Prefoldin_2	Prefoldin subunit	0.77	-1	21.10	472	500
Ctr	Ctr copper transporter family	1.9E-05	14	21.60	570	621
APG6_N	Apg6 coiled-coil region	0.005	6	45.00	1165	1271
Prominin	Prominin	0.00017	9	31.00	1191	1294
ADIP	Afadin- and alpha -actinin-Binding	0.004	6	29.10	1200	1288
Prefoldin_2	Prefoldin subunit	0.00031	10	21.10	1208	1247
LPP	Repeated sequence found in lipoprotein LPP	0.0002	11	21.00	1219	1263