c2pfam

AT4G33990.1 :

Domain Description Evalue Bits GA Start End
TPR_12 Tetratricopeptide repeat 0.27 1 30.10 89 111
PPR PPR repeat 0.48 0 25.00 92 115
PPR_2 PPR repeat family 0.62 0 30.00 92 117
PPR_1 PPR repeat 0.00049 9 23.80 115 132
PPR_2 PPR repeat family 1.1E-09 28 30.00 116 163
PPR_3 Pentatricopeptide repeat domain 0.0015 8 25.00 116 163
PPR PPR repeat 3.8E-07 20 25.00 119 141
PPR_long Pentacotripeptide-repeat region of PRORP 0.19 0 27.00 133 171
PPR_3 Pentatricopeptide repeat domain 0.58 0 25.00 180 211
PPR_2 PPR repeat family 0.0094 6 30.00 187 213
PPR PPR repeat 0.012 6 25.00 190 214
PPR_1 PPR repeat 4.2E-07 19 23.80 215 238
PPR_2 PPR repeat family 8.1E-07 19 30.00 216 240
PPR PPR repeat 1.8E-08 24 25.00 218 238
PPR_3 Pentatricopeptide repeat domain 0.41 0 25.00 218 236
PPR_long Pentacotripeptide-repeat region of PRORP 0.04 3 27.00 218 265
TPR_12 Tetratricopeptide repeat 0.41 0 30.10 219 239
PPR_3 Pentatricopeptide repeat domain 0.28 1 25.00 246 272
PPR PPR repeat 0.089 3 25.00 248 270
PPR_3 Pentatricopeptide repeat domain 0.0044 7 25.00 277 323
RNPP_C RNPP family C-terminal domain 0.2 0 26.50 280 318
PPR PPR repeat 6E-05 13 25.00 286 308
PPR_2 PPR repeat family 0.0059 6 30.00 286 310
PPR_1 PPR repeat 0.02 4 23.80 288 308
PPR_1 PPR repeat 0.0055 6 23.80 311 340
PPR_2 PPR repeat family 3.5E-08 23 30.00 312 350
RNPP_C RNPP family C-terminal domain 0.19 0 26.50 312 339
PPR_3 Pentatricopeptide repeat domain 0.00044 10 25.00 312 350
PPR PPR repeat 1.3E-07 21 25.00 314 342
PPR_long Pentacotripeptide-repeat region of PRORP 0.19 0 27.00 331 369
TPR_7 Tetratricopeptide repeat 0.19 2 27.90 350 363
PPR_2 PPR repeat family 0.065 3 30.00 387 410
PPR PPR repeat 0.0096 6 25.00 388 408
PPR_1 PPR repeat 0.28 0 23.80 394 408
PPR_3 Pentatricopeptide repeat domain 0.0029 7 25.00 413 445
PPR_1 PPR repeat 5.1E-08 22 23.80 414 442
PPR_2 PPR repeat family 1.4E-09 27 30.00 414 460
PPR PPR repeat 5.4E-11 32 25.00 416 445
RNPP_C RNPP family C-terminal domain 0.025 3 26.50 418 443
PPR_long Pentacotripeptide-repeat region of PRORP 0.0032 6 27.00 426 472
PPR_2 PPR repeat family 0.026 4 30.00 451 495
PPR PPR repeat 0.04 4 25.00 453 482
PPR_1 PPR repeat 0.00012 11 23.80 480 509
RNPP_C RNPP family C-terminal domain 0.013 4 26.50 482 512
PPR_2 PPR repeat family 0.014 5 30.00 485 509
PPR PPR repeat 3.8E-06 17 25.00 489 512
TPR_7 Tetratricopeptide repeat 0.02 5 27.90 491 509
TPR_12 Tetratricopeptide repeat 0.034 4 30.10 491 511
PPR_2 PPR repeat family 2.6E-15 46 30.00 516 563
PPR_1 PPR repeat 0.00037 10 23.80 516 543
PPR PPR repeat 8.7E-10 28 25.00 519 548
PPR_long Pentacotripeptide-repeat region of PRORP 1.3E-06 17 27.00 536 634
PPR_3 Pentatricopeptide repeat domain 3E-07 20 25.00 539 599
PPR_1 PPR repeat 0.0001 11 23.80 547 571
PPR PPR repeat 2.1E-06 17 25.00 553 580
PPR_1 PPR repeat 6.5E-06 15 23.80 583 614
PPR_2 PPR repeat family 0.0011 9 30.00 591 616
PPR PPR repeat 5.5E-06 16 25.00 591 614
PPR_3 Pentatricopeptide repeat domain 0.33 1 25.00 616 638
PPR PPR repeat 0.11 3 25.00 622 637
PPR PPR repeat 0.48 1 25.00 662 676
DYW_deaminase DYW family of nucleic acid deaminases 0 136 31.60 690 813

823

TPR_12
PPR
PPR_2
PPR_1
PPR_2
PPR_3
PPR
PPR_long
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_long
TPR_12
PPR_3
PPR
PPR_3
RNPP_C
PPR
PPR_2
PPR_1
PPR_1
PPR_2
RNPP_C
PPR_3
PPR
PPR_long
TPR_7
PPR_2
PPR
PPR_1
PPR_3
PPR_1
PPR_2
PPR
RNPP_C
PPR_long
PPR_2
PPR
PPR_1
RNPP_C
PPR_2
PPR
TPR_7
TPR_12
PPR_2
PPR_1
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR
PPR
DYW_deaminase

References:

RNPP_C

TPR_7

DYW_deaminase

PPR_long

TPR_12

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
TPR_12	Tetratricopeptide repeat	0.27	1	30.10	89	111
PPR	PPR repeat	0.48	0	25.00	92	115
PPR_2	PPR repeat family	0.62	0	30.00	92	117
PPR_1	PPR repeat	0.00049	9	23.80	115	132
PPR_2	PPR repeat family	1.1E-09	28	30.00	116	163
PPR_3	Pentatricopeptide repeat domain	0.0015	8	25.00	116	163
PPR	PPR repeat	3.8E-07	20	25.00	119	141
PPR_long	Pentacotripeptide-repeat region of PRORP	0.19	0	27.00	133	171
PPR_3	Pentatricopeptide repeat domain	0.58	0	25.00	180	211
PPR_2	PPR repeat family	0.0094	6	30.00	187	213
PPR	PPR repeat	0.012	6	25.00	190	214
PPR_1	PPR repeat	4.2E-07	19	23.80	215	238
PPR_2	PPR repeat family	8.1E-07	19	30.00	216	240
PPR	PPR repeat	1.8E-08	24	25.00	218	238
PPR_3	Pentatricopeptide repeat domain	0.41	0	25.00	218	236
PPR_long	Pentacotripeptide-repeat region of PRORP	0.04	3	27.00	218	265
TPR_12	Tetratricopeptide repeat	0.41	0	30.10	219	239
PPR_3	Pentatricopeptide repeat domain	0.28	1	25.00	246	272
PPR	PPR repeat	0.089	3	25.00	248	270
PPR_3	Pentatricopeptide repeat domain	0.0044	7	25.00	277	323
RNPP_C	RNPP family C-terminal domain	0.2	0	26.50	280	318
PPR	PPR repeat	6E-05	13	25.00	286	308
PPR_2	PPR repeat family	0.0059	6	30.00	286	310
PPR_1	PPR repeat	0.02	4	23.80	288	308
PPR_1	PPR repeat	0.0055	6	23.80	311	340
PPR_2	PPR repeat family	3.5E-08	23	30.00	312	350
RNPP_C	RNPP family C-terminal domain	0.19	0	26.50	312	339
PPR_3	Pentatricopeptide repeat domain	0.00044	10	25.00	312	350
PPR	PPR repeat	1.3E-07	21	25.00	314	342
PPR_long	Pentacotripeptide-repeat region of PRORP	0.19	0	27.00	331	369
TPR_7	Tetratricopeptide repeat	0.19	2	27.90	350	363
PPR_2	PPR repeat family	0.065	3	30.00	387	410
PPR	PPR repeat	0.0096	6	25.00	388	408
PPR_1	PPR repeat	0.28	0	23.80	394	408
PPR_3	Pentatricopeptide repeat domain	0.0029	7	25.00	413	445
PPR_1	PPR repeat	5.1E-08	22	23.80	414	442
PPR_2	PPR repeat family	1.4E-09	27	30.00	414	460
PPR	PPR repeat	5.4E-11	32	25.00	416	445
RNPP_C	RNPP family C-terminal domain	0.025	3	26.50	418	443
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0032	6	27.00	426	472
PPR_2	PPR repeat family	0.026	4	30.00	451	495
PPR	PPR repeat	0.04	4	25.00	453	482
PPR_1	PPR repeat	0.00012	11	23.80	480	509
RNPP_C	RNPP family C-terminal domain	0.013	4	26.50	482	512
PPR_2	PPR repeat family	0.014	5	30.00	485	509
PPR	PPR repeat	3.8E-06	17	25.00	489	512
TPR_7	Tetratricopeptide repeat	0.02	5	27.90	491	509
TPR_12	Tetratricopeptide repeat	0.034	4	30.10	491	511
PPR_2	PPR repeat family	2.6E-15	46	30.00	516	563
PPR_1	PPR repeat	0.00037	10	23.80	516	543
PPR	PPR repeat	8.7E-10	28	25.00	519	548
PPR_long	Pentacotripeptide-repeat region of PRORP	1.3E-06	17	27.00	536	634
PPR_3	Pentatricopeptide repeat domain	3E-07	20	25.00	539	599
PPR_1	PPR repeat	0.0001	11	23.80	547	571
PPR	PPR repeat	2.1E-06	17	25.00	553	580
PPR_1	PPR repeat	6.5E-06	15	23.80	583	614
PPR_2	PPR repeat family	0.0011	9	30.00	591	616
PPR	PPR repeat	5.5E-06	16	25.00	591	614
PPR_3	Pentatricopeptide repeat domain	0.33	1	25.00	616	638
PPR	PPR repeat	0.11	3	25.00	622	637
PPR	PPR repeat	0.48	1	25.00	662	676
DYW_deaminase	DYW family of nucleic acid deaminases	0	136	31.60	690	813