c2pfam

AT4G34590.1 :

Domain Description Evalue Bits GA Start End
SR-25 Nuclear RNA-splicing-associated protein 3.6E-07 20 55.00 3 100
HAUS-augmin3 HAUS augmin-like complex subunit 3 1.3E-05 15 27.80 10 142
PRKG1_interact cGMP-dependent protein kinase interacting domain 0.009 7 32.40 14 69
BioW 6-carboxyhexanoate--CoA ligase 3.8E-06 17 25.00 17 113
bZIP_Maf bZIP Maf transcription factor 0.00013 13 20.70 19 75
Cep57_CLD_2 Centrosome localisation domain of PPC89 0.00028 11 27.00 24 66
PCRF PCRF domain 1.4E-05 15 20.80 25 127
bZIP_2 Basic region leucine zipper 2.8E-09 27 21.30 25 67
bZIP_1 bZIP transcription factor 1.5E-12 38 22.00 26 67
DUF4200 Domain of unknown function (DUF4200) 0.00017 12 29.70 26 67
Nup54_57_C NUP57/Nup54 C-terminal domain 6.4E-05 13 25.60 47 63
FlaC_arch Flagella accessory protein C (FlaC) 0.014 6 22.00 50 71
HALZ Homeobox associated leucine zipper 0.012 6 26.30 51 65
YabA Initiation control protein YabA 0.0002 12 30.00 52 120
DUF4140 N-terminal domain of unknown function (DUF4140) 0.0031 8 27.00 67 111
PRKG1_interact cGMP-dependent protein kinase interacting domain 0.0032 8 32.40 78 116
bZIP_Maf bZIP Maf transcription factor 0.053 4 20.70 79 102
FlaC_arch Flagella accessory protein C (FlaC) 0.0037 8 22.00 80 103
Cep57_CLD_2 Centrosome localisation domain of PPC89 0.00084 10 27.00 81 105
HALZ Homeobox associated leucine zipper 0.0012 9 26.30 81 100
bZIP_1 bZIP transcription factor 0.0061 7 22.00 81 105
bZIP_2 Basic region leucine zipper 0.027 5 21.30 81 96
DUF4200 Domain of unknown function (DUF4200) 0.11 3 29.70 82 110

159

SR-25
HAUS-augmin3
PRKG1_interact
BioW
bZIP_Maf
Cep57_CLD_2
PCRF
bZIP_2
bZIP_1
DUF4200
Nup54_57_C
FlaC_arch
HALZ
YabA
DUF4140
PRKG1_interact
bZIP_Maf
FlaC_arch
Cep57_CLD_2
HALZ
bZIP_1
bZIP_2
DUF4200

References:

bZIP_1

HALZ

BioW
1445232 Investigation of the first step of biotin biosynthesis in Bacillus sphaericus. Purification and characterization of the pimeloyl-CoA synthase, and uptake of pimelate. Biochem J 1992;287:685-690.

HAUS-augmin3

PRKG1_interact

DUF4200

FlaC_arch
11250034 The archaeal flagellum: a different kind of prokaryotic motility structure. FEMS Microbiol Rev 2001;25:147-174.
11717274 Characterization of flagellum gene families of methanogenic archaea and localization of novel flagellum accessory proteins. J Bacteriol 2001;183:7154-7164.

PCRF

Nup54_57_C

SR-25
10708573 Molecular cloning and expression analysis of a putative nuclear protein, SR-25. Biochem Biophys Res Commun. 2000;269:444-450.
17952876 Dominant negative Rac1 attenuates paclitaxel-induced apoptosis in human melanoma cells through upregulation of heat shock protein 27: a functional proteomic analysis. Proteomics. 2007;7:4112-4122.

YabA

Cep57_CLD_2

DUF4140

bZIP_Maf
11416124 Phosphorylation of mafa is essential for its transcriptional and biological properties. Mol Cell Biol 2001;21:4441-4452.

bZIP_2
11906833 bZIP transcription factors in Arabidopsis. Trends Plant Sci 2002;7:106-111.
12867624 bZIP proteins of human gammaherpesviruses. J Gen Virol 2003;84:1941-1949.
7780801 Transcription factors 1: bZIP proteins. Protein Profile 1995;2:101-168.

Domain	Description	Evalue	Bits	GA	Start	End
SR-25	Nuclear RNA-splicing-associated protein	3.6E-07	20	55.00	3	100
HAUS-augmin3	HAUS augmin-like complex subunit 3	1.3E-05	15	27.80	10	142
PRKG1_interact	cGMP-dependent protein kinase interacting domain	0.009	7	32.40	14	69
BioW	6-carboxyhexanoate--CoA ligase	3.8E-06	17	25.00	17	113
bZIP_Maf	bZIP Maf transcription factor	0.00013	13	20.70	19	75
Cep57_CLD_2	Centrosome localisation domain of PPC89	0.00028	11	27.00	24	66
PCRF	PCRF domain	1.4E-05	15	20.80	25	127
bZIP_2	Basic region leucine zipper	2.8E-09	27	21.30	25	67
bZIP_1	bZIP transcription factor	1.5E-12	38	22.00	26	67
DUF4200	Domain of unknown function (DUF4200)	0.00017	12	29.70	26	67
Nup54_57_C	NUP57/Nup54 C-terminal domain	6.4E-05	13	25.60	47	63
FlaC_arch	Flagella accessory protein C (FlaC)	0.014	6	22.00	50	71
HALZ	Homeobox associated leucine zipper	0.012	6	26.30	51	65
YabA	Initiation control protein YabA	0.0002	12	30.00	52	120
DUF4140	N-terminal domain of unknown function (DUF4140)	0.0031	8	27.00	67	111
PRKG1_interact	cGMP-dependent protein kinase interacting domain	0.0032	8	32.40	78	116
bZIP_Maf	bZIP Maf transcription factor	0.053	4	20.70	79	102
FlaC_arch	Flagella accessory protein C (FlaC)	0.0037	8	22.00	80	103
Cep57_CLD_2	Centrosome localisation domain of PPC89	0.00084	10	27.00	81	105
HALZ	Homeobox associated leucine zipper	0.0012	9	26.30	81	100
bZIP_1	bZIP transcription factor	0.0061	7	22.00	81	105
bZIP_2	Basic region leucine zipper	0.027	5	21.30	81	96
DUF4200	Domain of unknown function (DUF4200)	0.11	3	29.70	82	110